Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g09
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496           30   2.3  
11_04_0274 - 15667178-15667444,15668352-15668678,15669430-156695...    29   5.2  

>02_02_0094 - 6705094-6705564,6705759-6706139,6706287-6706496
          Length = 353

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 742 RRVAVPTRADSQEVLPPVYAFLRRCSDCDTKYSCDWRS 629
           RR A   + +SQ+ L      +R CSDC+T  +  WRS
Sbjct: 154 RRRAQAHQDESQQQLQQALGVVRVCSDCNTTKTPLWRS 191


>11_04_0274 -
           15667178-15667444,15668352-15668678,15669430-15669563,
           15669669-15669726,15669842-15669961,15670814-15670876,
           15671388-15671539,15673002-15673116,15673907-15673981,
           15674474-15674538,15675020-15675128
          Length = 494

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 157 EAVTPQRRDRPVFHLRICES*RVLGNLCRFHYVRSKLYKTP 35
           E++ P+R D+P     +       G +C+FH+ + ++  TP
Sbjct: 353 ESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTP 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,879,735
Number of Sequences: 37544
Number of extensions: 396681
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)