Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g09
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-7|CAB05247.2|  195|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U55018-1|AAB40386.1|  195|Caenorhabditis elegans CeRac2 protein.       29   3.5  
Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z70284-15|CAD01085.1|   73|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        28   6.2  
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    28   6.2  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z82276-7|CAB05247.2|  195|Caenorhabditis elegans Hypothetical
           protein K03D3.10 protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 464 SFPLTYILCTFICYMCVCLYTTKPVNVSLW 553
           +FP  YIL  F  Y    +   +P+N+SLW
Sbjct: 27  AFPGEYILTVFDTYSTNVMVDGRPINLSLW 56


>U55018-1|AAB40386.1|  195|Caenorhabditis elegans CeRac2 protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 464 SFPLTYILCTFICYMCVCLYTTKPVNVSLW 553
           +FP  YIL  F  Y    +   +P+N+SLW
Sbjct: 27  AFPGEYILTVFDTYSTNVMVDGRPINLSLW 56


>Z70307-7|CAA94336.2|  531|Caenorhabditis elegans Hypothetical
           protein C39E9.7 protein.
          Length = 531

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 347 FYPTFDHELRTSNDILIFYFTCVIICTGYILREVAICFSRSVGEELCNAVEVSLRF 180
           F PTF H++   ++I   YFT +      IL  V  C S  + E+L N  +  +RF
Sbjct: 336 FGPTFFHKVLGHSEISSAYFTII----APILNLVTSCSSVYLFEKLANGEQNKMRF 387


>Z70284-15|CAD01085.1|   73|Caenorhabditis elegans Hypothetical
           protein K07F5.15 protein.
          Length = 73

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 497 ICYMCVCLYTTKPVNVSLWLIV*KTSIF*IYY 592
           + ++C C Y  +   VS WL+  K   F ++Y
Sbjct: 14  LLFICTCAYLKRVPRVSSWLLSEKKGFFGVFY 45


>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 380 LCHQFPQTGTYFYPTFDHELRTSN 309
           L  QFP +G Y+    +HELR+ N
Sbjct: 45  LVKQFPNSGRYWKAYIEHELRSKN 68


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 380 LCHQFPQTGTYFYPTFDHELRTSN 309
           L  QFP +G Y+    +HELR+ N
Sbjct: 40  LVKQFPNSGRYWKAYIEHELRSKN 63


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 380 LCHQFPQTGTYFYPTFDHELRTSN 309
           L  QFP +G Y+    +HELR+ N
Sbjct: 45  LVKQFPNSGRYWKAYIEHELRSKN 68


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical protein
            F31B12.2 protein.
          Length = 1089

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 412  LYFLSCDLYESCHNRFVFFSIDIHIMYIYMLY 507
            ++ L  D+ +SC NRF +FS   H  Y Y  Y
Sbjct: 978  VFCLFYDISDSCFNRFPYFS---HFGYCYFCY 1006


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,707
Number of Sequences: 27780
Number of extensions: 386829
Number of successful extensions: 838
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)