Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g07
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    98   2e-22
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    97   5e-22
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    28   0.37 
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   4.5  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   5.9  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 98.3 bits (234), Expect = 2e-22
 Identities = 42/76 (55%), Positives = 51/76 (67%)
 Frame = +2

Query: 2   GKRRDKTHTLCXRCGRSSYXIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLK 181
           G R +K+HT+C RCG+ S+ IQKS CA CGYPAAK RSY+W  KA          M +LK
Sbjct: 9   GMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLK 68

Query: 182 IVRRRFRNGFKEGKPT 229
            V R F+NGF+ GKPT
Sbjct: 69  KVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 97.1 bits (231), Expect = 5e-22
 Identities = 43/83 (51%), Positives = 52/83 (62%)
 Frame = +2

Query: 2   GKRRDKTHTLCXRCGRSSYXIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLK 181
           G R +K+HT+C RCG+ S+ IQKS CA CGYPAAK RSY+W  KA          M +LK
Sbjct: 9   GMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLK 68

Query: 182 IVRRRFRNGFKEGKPTPPKKAVA 250
            V R F+NGF+ GKP     A A
Sbjct: 69  KVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 186 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHXAHF 73
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 286 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 191
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 82  PMWISCSKITILPLVSEG*AQEDYW 156
           P W+SC+++ +L    +    +D W
Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,075,505
Number of Sequences: 5004
Number of extensions: 17350
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)