Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g07
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    95   9e-21
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    89   8e-19
U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    28   1.2  
Z50742-2|CAA90616.1|  491|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    25   8.1  
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    25   8.1  

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 40/79 (50%), Positives = 51/79 (64%)
 Frame = +2

Query: 2   GKRRDKTHTLCXRCGRSSYXIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLK 181
           GK+  K+HTLC RCG+SS+ IQK +CA CGYP AK R+Y+W  K+           RHL+
Sbjct: 9   GKKHVKSHTLCKRCGKSSFHIQKKRCASCGYPDAKKRTYNWGAKSIRRRTTGTGRTRHLR 68

Query: 182 IVRRRFRNGFKEGKPTPPK 238
            V  RFRNGF+EG    P+
Sbjct: 69  DVNARFRNGFREGTTPKPR 87


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 88.6 bits (210), Expect = 8e-19
 Identities = 38/77 (49%), Positives = 48/77 (62%)
 Frame = +2

Query: 2   GKRRDKTHTLCXRCGRSSYXIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLK 181
           GK+  K+HTLC RCG+SS+ IQK +CA CGY  AK R+Y+W  K+           RHL+
Sbjct: 9   GKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLR 68

Query: 182 IVRRRFRNGFKEGKPTP 232
            V  RFRNGF+   P P
Sbjct: 69  DVNARFRNGFRGTTPKP 85


>U41275-2|AAA82465.1|  438|Caenorhabditis elegans Hypothetical
           protein T25D1.2 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 5   KRRDKTHTLCXRCGRSSYXIQKSKCAXCGYPAA 103
           K    TH  C +CG+ +      KC  CG P A
Sbjct: 168 KNNFSTHHFCNKCGKVAQ--NSKKCKYCGGPVA 198


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 5   KRRDKTHTLCXRCGRSSYXIQKSKCAXCGYPAA 103
           K    TH  C +CG+ +      KC  CG P A
Sbjct: 96  KNNFSTHHFCNKCGKVAQ--NSKKCKHCGGPVA 126


>Z50742-2|CAA90616.1|  491|Caenorhabditis elegans Hypothetical
           protein K09A11.2 protein.
          Length = 491

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 301 FMVFLIFIYLAHIDS*RSYSLLGRRWFPFFKTITEAPPDNLQ 176
           F++F+IF Y+ H     S    G    PF   I + PPDN+Q
Sbjct: 8   FVIFIIF-YVFHFYWKVSKYPKGPLPLPFIGNIHQFPPDNVQ 48


>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/64 (21%), Positives = 24/64 (37%)
 Frame = +2

Query: 26  TLCXRCGRSSYXIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRN 205
           T   RCG  S+  + +  + C      L+ Y W              M+ ++I R+  R 
Sbjct: 42  TSLSRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFIRIARKYCRT 101

Query: 206 GFKE 217
            + E
Sbjct: 102 RYYE 105


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/64 (21%), Positives = 24/64 (37%)
 Frame = +2

Query: 26  TLCXRCGRSSYXIQKSKCAXCGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRN 205
           T   RCG  S+  + +  + C      L+ Y W              M+ ++I R+  R 
Sbjct: 42  TSLSRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFIRIARKYCRT 101

Query: 206 GFKE 217
            + E
Sbjct: 102 RYYE 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,028,586
Number of Sequences: 27780
Number of extensions: 99444
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)