Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g02
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     50   3e-07
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    46   4e-06
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    30   0.41 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.2  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    27   2.2  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   5.1  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   6.7  

>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
 Frame = +2

Query: 335 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 514
           IPPVTR        TT+     L+SP  L  +  L++R+ Q W                 
Sbjct: 16  IPPVTRYILLGTAATTILTLCQLLSPSMLVLHYPLVVRQKQ-WYRLFTNYLYAGTGFDFI 74

Query: 515 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNL-LFLGQAFTIMIVYV 691
             + F Y+Y   LE   F      +++  +   LL+   +    L   L Q+    I Y 
Sbjct: 75  MNIYFFYQYSTYLENFVFARNAKKYIIYLVKVALLIDAFSLISGLGSALNQSLAAAIAYN 134

Query: 692 WSRRNVFVRMNFFGLMNFQAPYL 760
           WS  N F ++ F    + Q  YL
Sbjct: 135 WSLFNSFSKIQFLFGFHVQGKYL 157


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 20/78 (25%), Positives = 41/78 (52%)
 Frame = +2

Query: 527 FTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWSRRN 706
           F  R+  MLE  S   +T  F+   +     +++ ++F  + F    F+  ++Y+WS ++
Sbjct: 53  FLLRFMSMLERSSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKH 112

Query: 707 VFVRMNFFGLMNFQAPYL 760
              R++  GL + +APY+
Sbjct: 113 PLYRISILGLFDVKAPYV 130


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 571 IENSRFCCHVHIWRLINDHMCFLC*SIVFRSSVYNH 678
           +E    CCH++   L   H CFLC + +   + Y H
Sbjct: 375 VERIDGCCHMNC--LCGTHFCFLCGAYLMEQNPYKH 408


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +2

Query: 281 LYYLDTMAYQTLLQEYM----LIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFN 430
           L Y  +  Y TLL+ +      I P+T+A   AC + ++    + +S F L+ N
Sbjct: 487 LSYQSSFDYDTLLRIFQKNGNFITPITQALLNACEIDSIYQSWEDISNFVLFDN 540


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 112 NATIFNYDENIKHIINLCDL 53
           N    NYDE  K  +NLCDL
Sbjct: 298 NVIWLNYDEPTKDFLNLCDL 317


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 30  IRSFSNYYKSHKLMMCFIFSS*LNIVAFKSLYR 128
           +RSFSNY KS  ++   +  + L I+  KS+ R
Sbjct: 305 VRSFSNYVKSSNVVNPSLSQASLEIIPRKSMKR 337


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 302 AYQTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPN 436
           A Q  +   + +   T  +  AC      +++ L+ P  LYF+PN
Sbjct: 198 AVQAHVMNQVRLGRATLLHARACYQKIGDIRMYLIDPHDLYFSPN 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,661
Number of Sequences: 5004
Number of extensions: 63419
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)