Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g02
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0709 - 35670153-35670350,35671206-35671259,35672444-356725...   132   2e-31
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533...    91   1e-18
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148...    28   9.3  

>03_06_0709 -
           35670153-35670350,35671206-35671259,35672444-35672527,
           35672688-35672902,35673959-35674058,35674178-35674276
          Length = 249

 Score =  132 bits (320), Expect = 2e-31
 Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 11/162 (6%)
 Frame = +2

Query: 308 QTLLQEYMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXX 487
           Q + + Y  +P +TR+Y TA VVTT+   L+++SP+ LY NP L+++ Y++WR       
Sbjct: 3   QAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLY 62

Query: 488 XXXXXXXXXXXVIFTYRYCRMLEEGSFRSRTADFVVMFIF-----------GGLLMIICA 634
                      + F  RYC++LEE SFR RTADF  M +F           GG++  I  
Sbjct: 63  FRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISE 122

Query: 635 FFVNLLFLGQAFTIMIVYVWSRRNVFVRMNFFGLMNFQAPYL 760
            F  +LFL  + T M+VYVWS+ N F+ M+F GL  F A YL
Sbjct: 123 TFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYL 164


>05_01_0594 -
           5337804-5337976,5338282-5338436,5338591-5338745,
           5338864-5338992,5339096-5339189,5339293-5339366,
           5339716-5339851,5341546-5341562
          Length = 310

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
 Frame = +2

Query: 326 YMLIPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXX 505
           Y  +PP+++AY T C   T+  QL +++P  L      + +K+Q+WR             
Sbjct: 8   YNSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSI 67

Query: 506 XXXXXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGL-LMIICAF-FVNLLFLGQAFTIM 679
                ++   RY   LE+G+F  RTADF+ M IFG + L+ + A  F+++ FLG     M
Sbjct: 68  NFGIRLLMIARYGVQLEKGAFEKRTADFLWMMIFGAISLLALSAIPFLDIYFLGVPMVSM 127

Query: 680 IVYVWSRRNVFVRMNFFGLMNFQAPYL 760
           ++YVWSR     +++ +GL+  ++ YL
Sbjct: 128 LLYVWSREYPNSQISMYGLVQLRSFYL 154


>03_06_0449 -
           34013973-34014056,34014595-34014630,34014729-34014816,
           34015034-34015143,34015611-34015715,34015812-34015903,
           34016145-34016232,34016407-34016526,34016603-34016721,
           34017253-34018126
          Length = 571

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 612 PPNMNMTTKSAVLDLKEPSSSILQYLYVNITLKKKLN 502
           PP    T+ +A     +PSSSI+ Y+  N+  +++LN
Sbjct: 303 PPEETETSINAKFRAIQPSSSIISYVEDNLLGRRRLN 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,708,257
Number of Sequences: 37544
Number of extensions: 329571
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)