Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g02
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...   186   1e-47
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...   186   1e-47
Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical ...    29   3.6  
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score =  186 bits (454), Expect = 1e-47
 Identities = 85/142 (59%), Positives = 101/142 (71%)
 Frame = +2

Query: 335 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 514
           +PPVTR YT ACV+ T AV L+ V+PF LYFN  LI+RKYQ WR                
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query: 515 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVW 694
             +IFTYRYC MLEEGSFR R ADFV MF+FG +LMI+   FV +LFLGQAFTIM+VY+W
Sbjct: 71  FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIW 130

Query: 695 SRRNVFVRMNFFGLMNFQAPYL 760
           SRRN  ++MNFFG++ F APYL
Sbjct: 131 SRRNPMIQMNFFGVLTFTAPYL 152


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score =  186 bits (454), Expect = 1e-47
 Identities = 85/142 (59%), Positives = 101/142 (71%)
 Frame = +2

Query: 335 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXXXXXXXXX 514
           +PPVTR YT ACV+ T AV L+ V+PF LYFN  LI+RKYQ WR                
Sbjct: 11  MPPVTRFYTGACVLLTTAVHLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL 70

Query: 515 XXVIFTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVW 694
             +IFTYRYC MLEEGSFR R ADFV MF+FG +LMI+   FV +LFLGQAFTIM+VY+W
Sbjct: 71  FNMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMILSGIFVQILFLGQAFTIMLVYIW 130

Query: 695 SRRNVFVRMNFFGLMNFQAPYL 760
           SRRN  ++MNFFG++ F APYL
Sbjct: 131 SRRNPMIQMNFFGVLTFTAPYL 152


>Z78418-1|CAB01696.1|  245|Caenorhabditis elegans Hypothetical
           protein F25D7.1 protein.
          Length = 245

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
 Frame = +2

Query: 317 LQEYML-IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFNPNLILRKYQLWRXXXXXXXXX 493
           L+ ++L IP VTR +  A  +  L  +   ++   ++   +L++ K+Q WR         
Sbjct: 3   LENFLLGIPIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYYP 62

Query: 494 XXXXXXXXXVI---FTYRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQ 664
                    ++   F Y Y + LE  ++R R+AD++ M IF           +++ FL +
Sbjct: 63  VTPQTGFHWLMMCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMALDIYFLLE 122

Query: 665 AFTIMIVYVWSRRNVFVRMNFFGLMNFQAPYL 760
              I ++YVW + N    ++F+  M F A YL
Sbjct: 123 PMVISVLYVWCQVNKDTIVSFWFGMRFPARYL 154


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 587 FVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWSRRNVFV 715
           F+V    GG+L++ICA+ + ++   Q   +   + W    +F+
Sbjct: 144 FLVGLSIGGMLVVICAWIMEVILPQQRMVVRGFFNWGWTRIFL 186


>AF002196-3|AAP68957.1|  916|Caenorhabditis elegans Hypothetical
           protein C09D4.4c protein.
          Length = 916

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 533 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 697
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 778 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 831


>AF002196-2|AAP68956.1|  915|Caenorhabditis elegans Hypothetical
           protein C09D4.4b protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 533 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 697
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 777 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 830


>AF002196-1|AAP68955.1|  913|Caenorhabditis elegans Hypothetical
           protein C09D4.4a protein.
          Length = 913

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 533 YRYCRMLEEGSFRSRTADFVVMFIFGGLLMIICAFFVNLLFLGQAFTIMIVYVWS 697
           ++  R +E+ SFR  + DF   F++   L   C  F N+L +G     ++ Y+ S
Sbjct: 775 WKKSRSMEQLSFRD-SVDFASSFVYKTSLNNACGKFKNILLVGTPHDQLVPYMSS 828


>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical
           protein C16A3.3 protein.
          Length = 1743

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 624 IINKPPNMNMTTKSAVLDLKEPSSSILQYLYVNITLKKKLNPRFP 490
           I ++  N+ +T + ++L LK PS + +Q L + +T+   +   FP
Sbjct: 488 ICDERKNLIVTCRESILGLKSPSVNSVQELEIGVTVPCVIRKVFP 532


>Z92806-2|CAB07257.1|  303|Caenorhabditis elegans Hypothetical
           protein K10G4.2 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 401 LVSPFQLYFNPNLILRKYQLW 463
           L+SPF L+F+ ++ +RK  +W
Sbjct: 99  LISPFMLFFHYHITIRKNSVW 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,843
Number of Sequences: 27780
Number of extensions: 342117
Number of successful extensions: 809
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)