Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4g02
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 335 IPPVTRAYTTACVVTTLAVQLDLVSPFQLYFN 430
           + P T  Y T C     A+ +D VS F   F+
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSRFFFPFS 370


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -1

Query: 654 NNRLTKKAHMIINKPPNMNMTTKSAVLDLKEPSSSILQYLYVNITLKKKLNPRFP-KNRN 478
           NN  T   H+  +    + +     +L L  P  S L+Y    +  ++  +PR    NR+
Sbjct: 120 NNHYTSHQHLRTHLRGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 179

Query: 477 ---VVNSLH 460
               +N++H
Sbjct: 180 QYEFLNAIH 188


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 567 KEPSSSILQYLYVNITLKKKLNPRFPKNRNVVNS 466
           K   SS  + L    TL   + P+FP+N +  N+
Sbjct: 343 KTDYSSFGKILATEPTLFSNVTPKFPRNIDEYNN 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,737
Number of Sequences: 438
Number of extensions: 4510
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)