Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4f24
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 38 0.006
SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21) 33 0.23
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 33 0.31
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 32 0.40
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40) 32 0.53
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 31 0.71
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 30 1.6
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 2.2
SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05) 30 2.2
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 29 5.0
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 5.0
SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084) 28 6.6
SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 28 6.6
SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033) 28 8.7
SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39) 28 8.7
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +3
Query: 228 EACRYVRGAWSECDSK--TNIRSRKLTLKKGD-PANCEVVKTIQKKCK-RTC-RYEKSSW 392
E R+ GAWSEC S + +R+R ++ K D N E K+C C + W
Sbjct: 53 ECPRWTAGAWSECSSTCGSGVRTRFVSCKPRDGTCNSEDKPDAYKECDVMECPTWSVGQW 112
Query: 393 SECSIN-GEMSRTDKLKSNSDSTCDQSRRKTRK--CN 494
S CS+ G R + + CD+ R+ + CN
Sbjct: 113 SSCSVTCGVGRRLRSVVCSIHGKCDKQRQPSSSTLCN 149
>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
Length = 472
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 342 TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAK 521
TI + RT + + E + +G SR ++ S TC+ +R TR CN+ AK
Sbjct: 189 TITRHTDRTHEHTDGT-HEHATHGRNSRRRNTRTRSTRTCNTLKRNTRTCNRRNTTHKAK 247
Query: 522 DK 527
++
Sbjct: 248 NQ 249
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 32.7 bits (71), Expect = 0.31
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Frame = +3
Query: 261 ECDSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKS----SWSECSINGEMSRT 428
EC+S S T + G CE K ++C+ T E + S SEC E T
Sbjct: 59 ECESTRECES---TRECGSTTKCESTK---EECESTSECESTRECESTSECESTTECEST 112
Query: 429 DKLKSNSDSTCDQSRRKTRKCNKNKQ 506
+ +S S+ TR+C K+
Sbjct: 113 SECESTSECASTTECESTRECESTKE 138
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 318 PANCEVVKTIQKKC-KRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRR----KT 482
P+ +V K + +KC K TCR+ K +WS+ + S +K K D R K
Sbjct: 471 PSGNKVFKCLNQKCGKETCRHCKENWSD-HFGLKCSEIEK-KGEKDLRISYEERMTMAKI 528
Query: 483 RKCNK 497
RKC+K
Sbjct: 529 RKCHK 533
>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
Length = 1265
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +3
Query: 330 EVVK--TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKT-RKCNKN 500
E+VK + K+ K E++ SE ++NG S ++LKS+ +T DQS + +K K
Sbjct: 535 EMVKQSAVVKETKPNNVIEETVESETTVNGLESDPERLKSSQGTTVDQSVKDVPKKKKKG 594
Query: 501 KQ 506
KQ
Sbjct: 595 KQ 596
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 31.5 bits (68), Expect = 0.71
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +3
Query: 339 KTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLA 518
KT +KK K+ + + + E S N E +K + S + ++S+ K + +KNK+ K A
Sbjct: 431 KTDKKKSKKKSKDKSKNKGEKSKNKEEESKNK-EEKSKNKEEESKNKEEE-SKNKEEKRA 488
Query: 519 KDKGR 533
K KG+
Sbjct: 489 KKKGK 493
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +3
Query: 351 KKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKDKG 530
+K K+T +++ + S+ + +TDK KS S D+S+ K K ++ K++
Sbjct: 407 RKRKKTHKHKHAKKSKTEEQTDDGKTDKKKSKKKSK-DKSKNKGEKSKNKEEESKNKEEK 465
Query: 531 RRNRQ 545
+N++
Sbjct: 466 SKNKE 470
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 405 INGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNK 503
+ G+ D++KS C+Q RR R C K K
Sbjct: 2130 VTGDKGVNDEVKSREKRDCEQGRRSKRSCIKYK 2162
>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1219
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/96 (26%), Positives = 41/96 (42%)
Frame = +3
Query: 171 WEENDHEVLIRSAXGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ 350
W+E+ H + R + AK + + ++EC S N + K D NC T
Sbjct: 100 WKESIHSLACRCSAAAKKKGYSFFAIQFYAECWSGPN-TADFAKHGKADDKNCFSELTTD 158
Query: 351 KKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDST 458
K + C +K S EC + + K+K +S S+
Sbjct: 159 VKNRPPC--DKKSEDECVGIDDTNYVYKVKEDSASS 192
>SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
Length = 1143
Score = 29.9 bits (64), Expect = 2.2
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Frame = +3
Query: 162 GEVWEENDHEVLIRSAXGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEV-- 335
GE+ + RS K R ++S S+ R++K L K N ++
Sbjct: 675 GEMSSRQSSQSRGRSTEKNKKRRYSESSSDSFSSSSSEDRRRTKKKKLSKHRKNNKDLEL 734
Query: 336 --VKTIQKK--CKRTCRYEKSSWSECSIN-GEMSRTDKLKSNSDSTCDQSRRKTRKCNKN 500
+K ++K+ K++ +Y + S+CS + GE S + + +S + R+K K N+
Sbjct: 735 QPIKKVKKRKETKKSRKYSTTD-SDCSSDDGENSDSSRERSIKKHKKKKKRKKKIKKNRK 793
Query: 501 KQVKLAKDKGRRNRQ 545
K ++ + K +N++
Sbjct: 794 KTME-NESKNEKNKR 807
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +3
Query: 267 DSKTNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSN 446
D+ +++ ++K K+ + C+ + EK E N E R D +S+
Sbjct: 133 DNSSDVSAKKKQCKEERKRKRHKLSCESSSCEESSDSEKRLKKEK--NKEKQR-DSSESS 189
Query: 447 SDSTCDQSRRKTRKCNKNKQVKLAKD 524
SDS D+ RRK +K K+K+ K AKD
Sbjct: 190 SDSEDDRKRRK-KKVKKDKKQK-AKD 213
>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 360 KRTCRYEKSSWSECSINGEMSRTDKLKSNSD 452
K C YE S + +I GEM+ D+ K N D
Sbjct: 729 KHVCAYEISGMTRGTIGGEMTVNDEYKYNDD 759
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 342 TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQV 509
T ++ RTC C+ + +M+RT + + TC + R C ++Q+
Sbjct: 1340 TTHEQMNRTCTTHAKMNRTCTTHEQMNRTYTTHAQMNRTCTTHAQMNRTCTTHEQM 1395
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/59 (23%), Positives = 24/59 (40%)
Frame = +3
Query: 342 TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLA 518
T + RTC C+ + +M+RT + TC + R C ++Q+ A
Sbjct: 1400 TTHAQMSRTCTTHAQMNRTCTTHAQMNRTYTTHVQMNRTCTTHEQMNRTCTTHEQMNRA 1458
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 342 TIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQV 509
T ++ RTC C+ + +M+RT + + + TC + R C + Q+
Sbjct: 1490 TTHEQMNRTCTTHAKMNRTCTTHAQMNRTYTIHAQMNRTCTTHAQMNRTCITHAQM 1545
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +3
Query: 282 IRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTC 461
I+S+K T+KK + N + +++K+CK R + +I E++ +
Sbjct: 603 IKSQKETMKKLETENSGLAASLEKECKEVERLKGVDEEIVNIKIELNDVQIKLRETSMEL 662
Query: 462 DQSRRKTRKCNKNKQVKLAK 521
+++ K R K++Q K
Sbjct: 663 GKTQAKNRSLIKHEQALQGK 682
>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1507
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/81 (20%), Positives = 32/81 (39%)
Frame = +3
Query: 276 TNIRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDS 455
T S +TL + P + + + +C + C +G ++ +
Sbjct: 1214 TRNTSHGVTLTRNTPRDVTLTCYTSRDVTLSCNTSRGVILTCYTSGGVTLSCNTSHGVTL 1273
Query: 456 TCDQSRRKTRKCNKNKQVKLA 518
TC+ SR T CN ++ V L+
Sbjct: 1274 TCNTSRDVTLSCNTSRDVTLS 1294
>SB_42487| Best HMM Match : Extensin_2 (HMM E-Value=0.084)
Length = 635
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 529 VAEIASKDMGCFENFTIIINEQCLFVDSHLYLSLVPSSYIAKY 657
V +A KD+G + + L D+H LSL+PS K+
Sbjct: 15 VTRVARKDIGLLWPVLGVSRARLLITDTHKVLSLLPSCSFRKF 57
>SB_37941| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 1328
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +3
Query: 285 RSRKLTLKKGDP--ANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKS-NSDS 455
R R L K P AN T Q +T E++S SE + + D ++ +D
Sbjct: 573 RRRYLDAIKEKPVSANSTQTDTAQDGTTKT-EIEETSNSEPTEKSHTDKDDDRQNVETDK 631
Query: 456 TCDQSRRKTRKCNKNKQVKLAKDKGRRNR 542
TC +T KC + ++ K +G +N+
Sbjct: 632 TCSIQNLETNKCRCGETLETDKREGGQNK 660
>SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)
Length = 809
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = +3
Query: 282 IRSRKLTLKKGDPANCEVVKTIQKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTC 461
I+S+K T+KK + N + + +K+CK R + +I E++ +
Sbjct: 676 IKSQKETMKKLETENSGLAASFEKECKEVERLKGVDEEIVNIKIELNDVQIKLRETSMEL 735
Query: 462 DQSRRKTRKCNKNKQVKLAK 521
+++ K R K++Q K
Sbjct: 736 GKTQAKNRSLIKHEQALQGK 755
>SB_39605| Best HMM Match : zf-TRAF (HMM E-Value=5.3e-39)
Length = 684
Score = 27.9 bits (59), Expect = 8.7
Identities = 25/126 (19%), Positives = 48/126 (38%)
Frame = +3
Query: 168 VWEENDHEVLIRSAXGAKNREACRYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTI 347
+W+ + LIRS G + C++V ++C + R +K + + +C +
Sbjct: 124 LWDHSLIGSLIRSLVG--HLAECKFVS---ADCSNSCGARIQKRRMSEHTSKDCPKRRVC 178
Query: 348 QKKCKRTCRYEKSSWSECSINGEMSRTDKLKSNSDSTCDQSRRKTRKCNKNKQVKLAKDK 527
+CK YE+ C + + +S R C + +V +DK
Sbjct: 179 CARCKAEMSYEQLRVHSCPALRDRGSDRGSNRSVNSVSSDHVTCPRNCGERMRV---QDK 235
Query: 528 GRRNRQ 545
R R+
Sbjct: 236 ARHMRE 241
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 27.9 bits (59), Expect = 8.7
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Frame = +3
Query: 237 RYVRGAWSECDSKTNIRSRKLTLKKGDPANCEVVKTIQ-----KKCKRT-CRYEK----- 383
++ R WS C SKT ++ + A+ TI KKC T CR
Sbjct: 36 KFNRSKWSTC-SKTCGSGKQSRFEPVSGADLCTKGTIAAERKTKKCNLTPCRVNGGWSAY 94
Query: 384 SSWSECSIN---GEMSRT----DKLKSNSDSTCDQSRRKTRKC 491
SSWS C+ + G +RT + SN C +KTRKC
Sbjct: 95 SSWSSCTKSCGGGTQTRTRTCTNPKPSNGGRDCWGDSKKTRKC 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,317,971
Number of Sequences: 59808
Number of extensions: 401904
Number of successful extensions: 1262
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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