Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4f22
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   4.5  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   6.0  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 377 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 505
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
 Frame = +3

Query: 369 SSTMLSQELEPTKKPSSRSCARFPTMVSVPYPLFTNNCTARAWNRT*KATRRDTSRDCAC 548
           S    S+     KK S       P + ++P+    ++ T  ++    K   R  SR    
Sbjct: 434 SRLSFSRSSSRMKKGSKAKHEDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRTKSR-MQQ 492

Query: 549 RCAWPTGTKTRASM----KAQPKPMPKHLPPLVKVNGEPTNQSSTPSLSLAP 692
              W   +K R+S      A P P+P+      +V+ EP      PS+   P
Sbjct: 493 FINWFKPSKERSSNGNSDSASPPPVPRLSITRSQVSREPEKPEEIPSVPPLP 544


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 591 KAQPKPMPK-HLPPLVKVNGEPTNQSSTPSLSLAPISS 701
           KAQ +  PK   PP   V   P  + +TP +   P SS
Sbjct: 315 KAQQQQSPKAQQPPAHLVQSAPVQRKTTPKIQRLPPSS 352


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 475  TTVRQEPGIGLKRRHVG 525
            T +  +PG  LK+RH+G
Sbjct: 1174 TNIEHDPGCTLKKRHIG 1190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,860
Number of Sequences: 5004
Number of extensions: 48787
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)