Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4f20
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    26   9.6  
05_04_0060 + 17576427-17578781                                         26   9.6  

>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 1    AEDACSAMNGTEMLGATLKV 60
            AEDA S +NG E  G+ LKV
Sbjct: 1089 AEDAVSKLNGMEFHGSPLKV 1108


>05_04_0060 + 17576427-17578781
          Length = 784

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 146 EVREEAGSTTHTVAAAAGRTI 208
           E  +E G  THT A AAGR +
Sbjct: 217 ETGDEVGHGTHTAATAAGRFV 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,466,634
Number of Sequences: 37544
Number of extensions: 79903
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)