Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4f20
         (396 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34935-1|AAA73521.1|  197|Drosophila melanogaster RNA binding pr...    35   0.034
AY071363-1|AAL48985.1|  200|Drosophila melanogaster RE39606p pro...    35   0.034
AE014134-1804|AAF52890.1|  200|Drosophila melanogaster CG5655-PA...    35   0.034
L04929-1|AAA28850.1|  135|Drosophila melanogaster RNA binding pr...    27   6.8  

>L34935-1|AAA73521.1|  197|Drosophila melanogaster RNA binding
           protein protein.
          Length = 197

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   AEDACSAMNGTEMLGATLKVEISR 72
           AE AC  +NG+E+LG+ L+VEIS+
Sbjct: 56  AEKACDILNGSELLGSQLRVEISK 79


>AY071363-1|AAL48985.1|  200|Drosophila melanogaster RE39606p
           protein.
          Length = 200

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   AEDACSAMNGTEMLGATLKVEISR 72
           AE AC  +NG+E+LG+ L+VEIS+
Sbjct: 59  AEKACDILNGSELLGSQLRVEISK 82


>AE014134-1804|AAF52890.1|  200|Drosophila melanogaster CG5655-PA
           protein.
          Length = 200

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = +1

Query: 1   AEDACSAMNGTEMLGATLKVEISR 72
           AE AC  +NG+E+LG+ L+VEIS+
Sbjct: 59  AEKACDILNGSELLGSQLRVEISK 82


>L04929-1|AAA28850.1|  135|Drosophila melanogaster RNA binding
           protein protein.
          Length = 135

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 1   AEDACSAMNGTEMLGATLKVEIS 69
           AEDA +A++GT   G  ++VE+S
Sbjct: 60  AEDATAALDGTRCCGTRIRVEMS 82


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,822
Number of Sequences: 53049
Number of extensions: 128069
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)