Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4f18
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 32 0.53
02_05_0201 + 26687369-26689228 31 1.2
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 30 2.2
04_01_0260 - 3506672-3508981 30 2.2
05_05_0057 + 21995018-21997006 29 3.8
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 28 6.6
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 6.6
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027... 28 8.7
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 31.9 bits (69), Expect = 0.53
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 641 ITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQT-RSNAVRQNFPETNVR 465
+ R + VP++R G+ PQ+NS Q+ + +VP+ K + V++ P N
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQKREPPVNAA 165
Query: 464 TP 459
P
Sbjct: 166 LP 167
>02_05_0201 + 26687369-26689228
Length = 619
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 361 PPPAKSMPTPATFKVLM*LCKRGFCC 438
PPP + P P T++ +CK+GF C
Sbjct: 23 PPPPQPPPPPLTYRHHCKVCKKGFMC 48
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -3
Query: 528 LPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRL 358
LP A S+TK PR D A A R + TA + PF +H +E +G GRRR
Sbjct: 36 LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRR 94
Query: 357 S 355
S
Sbjct: 95 S 95
>04_01_0260 - 3506672-3508981
Length = 769
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = -1
Query: 671 RFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVR 492
RF+ + ++ R N++ P ++ G Q N LRQ R ++ ++ + Q + NA
Sbjct: 359 RFILSLNLFRFLVNSNNPTRYRMWSGTIG-QYNLLRQCTRQEDEKTSNFWSSQWKKNAPE 417
Query: 491 QNFPETNVRTPEGVQ 447
+ E G+Q
Sbjct: 418 DTWMEYEYHNSRGIQ 432
>05_05_0057 + 21995018-21997006
Length = 662
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -3
Query: 480 RDQRAHARRCSKRTAAKPPFT*SHENLESSR------SGHTLGRRRLSFVYRRHISTRYN 319
R A +RC+ +A+ F+ + L SSR +G+ + RRR R+ S RY+
Sbjct: 555 RGCNARMQRCNSNASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS 614
Query: 318 QRHQ*N 301
H N
Sbjct: 615 PGHADN 620
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = -3
Query: 606 CISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSK 445
C++ H S+ +A + + AR L + + + D + H R C+K
Sbjct: 204 CLTAHATASDGKVAQLETELEVARDDLQKMKEIVASNDVAFQNDSKIHPRNCAK 257
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -1
Query: 719 NLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 540
N G ++ PGY SNN + S S + +N V + +Q + N+ + + N
Sbjct: 143 NAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQS----YQSYTPSDTNAAQSSSSLPN- 197
Query: 539 PDFHYH 522
+HYH
Sbjct: 198 NSYHYH 203
>05_07_0143 +
28000038-28000211,28002217-28002230,28002713-28002788,
28003304-28003865,28004476-28004761,28004848-28005118,
28005478-28005633,28005871-28006368,28006809-28007093
Length = 773
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 335 LVQDIINAINRTGGSYYVQGRNAGENVESCLLLQRTCRQDRNL-AQSDVN 189
LVQ + +NR Y R+ G + + +L +R C NL A D+N
Sbjct: 29 LVQSLKEIVNRPEAEIYAALRDCGMDPDEAILFKRQCGFKVNLRAWYDIN 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,659,767
Number of Sequences: 37544
Number of extensions: 461062
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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