Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4f13
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    29   3.4  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    29   3.4  
U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
            F21H12.6 protein.
          Length = 1374

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 123  INYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFDEQQVWKGDADSKRATI---N 293
            IN ++  YE L    EQ+D  VS  +   D       F+ +  VW    D+K A I   +
Sbjct: 1249 INKKSEGYEALKSKSEQIDATVSEELKKLDSNWTGNQFYVKLLVWLSADDTKTALISAKH 1308

Query: 294  VIVSGQFNMRVKLCNEDG 347
                GQF    KL N+ G
Sbjct: 1309 AAALGQFGRCAKLLNKAG 1326


>Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical
           protein F32D8.12b protein.
          Length = 460

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 556 VSYPSAVAME*TTPSKQYPEVLKLCNDRA 642
           ++ P AV +E  T  +Q  E+LKLCNDRA
Sbjct: 48  IAPPPAVVLE-PTNVEQVSEILKLCNDRA 75


>Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical
           protein F32D8.12a protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +1

Query: 556 VSYPSAVAME*TTPSKQYPEVLKLCNDRA 642
           ++ P AV +E  T  +Q  E+LKLCNDRA
Sbjct: 48  IAPPPAVVLE-PTNVEQVSEILKLCNDRA 75


>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -1

Query: 389 GVCDFDQHGIA-YGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVRYVAN 213
           G  D  QHG +  G  +    F T   LP H +      TVG + PY L   +   Y  N
Sbjct: 190 GFTDHKQHGSSSVGVDISFVNFKTAYGLPEHADAFALRNTVGNSDPYRLYNLDVFEYELN 249

Query: 212 ------VAVPYV 195
                 V++PY+
Sbjct: 250 NPMALYVSIPYI 261


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -1

Query: 389 GVCDFDQHGIA-YGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVRYVAN 213
           G  D  QHG +  G  +    F T   LP H +      TVG + PY L   +   Y  N
Sbjct: 204 GFTDHKQHGSSSVGVDISFVNFKTAYGLPEHADAFALRNTVGNSDPYRLYNLDVFEYELN 263

Query: 212 ------VAVPYV 195
                 V++PY+
Sbjct: 264 NPMALYVSIPYI 275


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
           protein 68 protein.
          Length = 5079

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 722 SKRTRPLGFLYGGP--RIVDGNFEIFASPARSLQSFKTSGYCFEGVVYSIATADGYETVQ 549
           S RTR +GFL+G    R+  GN E    P    +  + +   +EG   ++  A     V+
Sbjct: 92  SMRTRNMGFLFGNDVLRLFHGNDECLTIPENWSEHPQHNMVIYEGGA-AVTQARSLWRVE 150

Query: 548 QVR*IWQGNFV 516
            +R  W G  V
Sbjct: 151 LIRMKWHGALV 161


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
           protein.
          Length = 5071

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 722 SKRTRPLGFLYGGP--RIVDGNFEIFASPARSLQSFKTSGYCFEGVVYSIATADGYETVQ 549
           S RTR +GFL+G    R+  GN E    P    +  + +   +EG   ++  A     V+
Sbjct: 213 SMRTRNMGFLFGNDVLRLFHGNDECLTIPENWSEHPQHNMVIYEGGA-AVTQARSLWRVE 271

Query: 548 QVR*IWQGNFV 516
            +R  W G  V
Sbjct: 272 LIRMKWHGALV 282


>U28738-3|AAA68310.2|  468|Caenorhabditis elegans Hypothetical
           protein T28D9.4 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 132 EATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFF 239
           + T Y+N IKL +  +VH++++ W   I +I  + +
Sbjct: 113 DRTKYKNEIKLLKTFNVHLTYSTWINSILEILALIY 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,298
Number of Sequences: 27780
Number of extensions: 402452
Number of successful extensions: 1132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)