Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4f09
(435 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.95
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4) 29 1.7
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20) 28 2.9
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08) 28 2.9
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0) 28 3.8
SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 3.8
SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10) 27 5.0
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 27 5.0
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62) 27 5.0
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30) 27 6.7
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +2
Query: 113 TSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSG 292
T + +T ++ GT + T TS A NT T S T + + ++S
Sbjct: 383 TQNSNTTTTTTIAPAPEGTKSNTTVTSKPAWLTQNSNTT-TTTSTIATPKTPDTTAASSA 441
Query: 293 TTSAPKAPSP 322
TS+P AP+P
Sbjct: 442 DTSSPNAPTP 451
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 131 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
+T S+TK TA +T T A + T ++S T + S ST+GTT+AP
Sbjct: 1005 TTSASMTK--HATAAPITTNGTTAEPISTDGTTVLSMS---TARTTTASMSTAGTTAAP 1058
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 113 TSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSG 292
T+ ++T+G+ T+ T ST A +TN T+S + ST G
Sbjct: 1064 TTAAPITTNGTTTEPMSTDERNATTMSTDGTTAAPMSTNRTTVSPMSMDRTTAAPISTGG 1123
Query: 293 TTSAPKA 313
T +AP++
Sbjct: 1124 TNTAPRS 1130
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 161 RGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
R TAT ++ T A ++ T +++S + T +AP+S T GTT+AP
Sbjct: 565 RTTATPMSIDGTTAAPISSDGTTASSMSTDGT-TAAPVS--TDGTTAAP 610
Score = 27.9 bits (59), Expect = 3.8
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 113 TSKQHLSTHGSLTKIRR---GTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGS 283
T+ +ST G+ T R TA ++ T A + T A IS + T +AP+S
Sbjct: 1453 TASAPMSTDGTNTVPRSMDGTTAAPMSMDGTTAVPMSTDGTTAAPISTDGT-TAAPIS-- 1509
Query: 284 TSGTTSAP 307
T GTT+AP
Sbjct: 1510 TDGTTAAP 1517
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +2
Query: 131 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPK 310
ST G+ R T ST A+ +T T+S + + ST GTT+AP+
Sbjct: 1180 STDGTTAVPRSMDGTTSAPMSTDGTTIASMSTQGTTVSPMSMDRTTAVPISTGGTTTAPR 1239
Query: 311 A 313
+
Sbjct: 1240 S 1240
>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
Length = 382
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 155 IRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAP--MSGSTSGTTSAPKAPSPV 325
+ + T ++ T TVA A ++ ATISR ++ T GT S P P P+
Sbjct: 11 LSKETTSRTTSERTVALSSVAHSSTRATISRPTGSYNSSHRTIPGTRGTRSLPNGPGPL 69
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
T + ++ T A + TN A +S + T +APMS T GTT+AP
Sbjct: 2389 TVSSMSTDGTTAAPMSTDGTNAAPMSTDGT-TAAPMS--TDGTTAAP 2432
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
TA ++ T A + T A +S + T +APMS T GTT+AP
Sbjct: 2339 TAVPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2382
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
TA ++ T A + T A +S + T +APMS T GTT+AP
Sbjct: 2419 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2462
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
TA ++ T A + T A +S + T +APMS T GTT+AP
Sbjct: 2429 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2472
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
TA ++ T A + T A +S + T +APMS T GTT+AP
Sbjct: 2439 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2482
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
TA ++ T A + T A +S + T +APMS T GTT+AP
Sbjct: 2449 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2492
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
TA ++ T A + T A +S + T +APMS T GTT+AP
Sbjct: 2459 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2502
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +2
Query: 167 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 307
TA ++ T A T A IS + T + PMS T GTT+AP
Sbjct: 2565 TAAPMSMDRTTAAPMITDETTAAPISTDVT-TAVPMS--TDGTTAAP 2608
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +2
Query: 98 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMS 277
+N + + ST S A T+TS R + + +T TIS C A
Sbjct: 154 ANTSANTSANTSTDTSTDTSPDTRANTSTYTSANTRTYTSTSTRANTISSTCANTCANTR 213
Query: 278 GSTSGTTSA 304
+TS T A
Sbjct: 214 SNTSANTRA 222
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 149 TKIRRGTAT-KVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSA 304
T R T++ + + ST A + NT+ T + SA S +TS TSA
Sbjct: 110 TPTRANTSSYTIPYASTDASTYTIANTSANTSANTSANTSANTSANTSANTSA 162
>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
Length = 525
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 310 LRRAGCPTCRPTHWGRETC 254
++R GCPT P H G TC
Sbjct: 157 IKRKGCPTLIPPHRGTATC 175
>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
Length = 344
Score = 28.3 bits (60), Expect = 2.9
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = +2
Query: 32 CHFLLK*IQETAK***AICLR*SNRPPTSKQHLSTHGSLTKIRR---GTATKVTWTSTVA 202
C +K ++E A+ R + PP++ + + RR T TK T A
Sbjct: 214 CTLCIKKMREATSSTTALKNRQPDAPPSNSRTFAAARPSQSFRRPAPSTETKSFAPPTTA 273
Query: 203 RKFAAKN-TNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS 337
+ FA +N A+ S++ P+SG GT+SA + + G +S
Sbjct: 274 QSFAIPGLSNAASTSKQ------PISGGVGGTSSATSSGASTGQKS 313
>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 542
Score = 27.9 bits (59), Expect = 3.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 232 CYYFKRVYRSLCPNEWVDKWDNQR 303
C Y+++ R L N W++ W Q+
Sbjct: 443 CLYYEQSNRELWDNSWIEGWKRQK 466
>SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 543
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +1
Query: 127 PFDPRFPNQNQTRHC----YQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWD 294
P R N +RH Y SYV F K +G+K + +RV R P D
Sbjct: 412 PLVKRRRNLQLSRHTPVNTYPSYVVFENLPKYKGKKLKSA---ERVKRCDSPKPSPSSSD 468
Query: 295 NQRAEGTF 318
N+ A+ TF
Sbjct: 469 NEDADATF 476
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 106 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 207
P +TAP P+ P + + C SYV F +K
Sbjct: 3290 PEIQRTAPVSPQTPIEYKCNKCRNSYVSFSEMKK 3323
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 103 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 207
+P +TAP P+ P + + C SYV F +K
Sbjct: 3499 TPEMQETAPVSPQTPIEYKCNKCRNSYVSFSEMKK 3533
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 106 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 207
P +TAP P+ P + + C SYV F +K
Sbjct: 3710 PEIQRTAPVSPQTPIEYKCNKCSNSYVSFSEMKK 3743
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 103 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 207
+P +TAP P+ P + + C SYV F +K
Sbjct: 3919 TPEMQETAPVSPQTPIEYKCNKCSNSYVSFSEMKK 3953
>SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10)
Length = 171
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -3
Query: 337 GSKSYRRRCLRRAGCPTCRPTHWGRETCTLS*NSSMVRIFRRELSGNGGSP 185
G K RRR R C T +HWG +C S R + + GGSP
Sbjct: 55 GHKHRRRRYCSRVNCQTSNWSHWG--SCHYHSTQSRSRNIIKN-AACGGSP 102
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 73 IISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVD 189
++ ++PE ++ A KT PF PR + ++ H QS ++
Sbjct: 211 LLESLPEKVRI-ALAKTVPFPPRLGHPDEYAHLVQSVME 248
>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
Length = 375
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 140 GSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 319
GS++K+ G+ ++V+W S AA +H S + G +A + + + + A S
Sbjct: 301 GSISKVSCGSISQVSWGSIPKSHGAASLKSHGAASLKSHG-AASLKSHVAASLKSHGAAS 359
Query: 320 P 322
P
Sbjct: 360 P 360
>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
Length = 591
Score = 27.1 bits (57), Expect = 6.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 164 GTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG--STSGTTSAPKAPSPV 325
GT T STVA + + +T S T S+ ++G TSG TS+P + +PV
Sbjct: 260 GTQATSTAPSTVANQQQSSRAFVSTPS-SVTSASSVVNGPTETSGMTSSPSSTAPV 314
>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 349 RERLG-SKSYRRRCLRRAGCPTCRPTH 272
R RLG K RR L R+GC T P H
Sbjct: 710 RSRLGVPKGSRRGSLERSGCSTPDPEH 736
>SB_17372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 218 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 325
K+ N T T +S P+S S S +TS P SPV
Sbjct: 108 KSCNTCTNGGSETTMSPPVSPSASVSTSRPSTLSPV 143
>SB_44697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 245 RECTGLSAPMSGSTSGTTSAPKAPSPV 325
R+ T +++ SGS+S T+SAP PS +
Sbjct: 251 RKQTLITSRASGSSSSTSSAPLTPSSI 277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,691,876
Number of Sequences: 59808
Number of extensions: 288121
Number of successful extensions: 791
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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