Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4f08
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   1.4  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    28   1.8  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   5.6  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   5.6  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    26   7.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   7.5  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   9.9  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   9.9  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   9.9  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 545 TNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSS-LPTVSVFMDSSTR 369
           ++S+P+T     S S   SS S    S +S P+S    I  MS S+ + TV+V   SS+ 
Sbjct: 205 SSSVPITS--STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262

Query: 368 VLGSSEP 348
              S  P
Sbjct: 263 STSSEVP 269


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 295 ENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 396
           ENVI   +G  +   +    +DPN  +E +MKTL
Sbjct: 105 ENVIAHLRGTKKLDLFQCARVDPNVPIETTMKTL 138


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 267 NHHRGDGLQRKRDYWLQGVL 326
           N H+G G+  K D W  GVL
Sbjct: 223 NVHKGFGIDEKSDIWALGVL 242


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 401 TVSVFMDSSTRVLGSSEPPLYAYAW 327
           T  ++M+ ++ + G+S PP Y Y +
Sbjct: 194 TTPLYMERASYLFGASNPPAYTYTY 218


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 599 RHDLLHVWYAK*LLFCRF 546
           R+D LHVW    LL C+F
Sbjct: 20  RYDTLHVWKLIKLLICKF 37


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 702 RDRGHCASSRRREYDSQTKVYVHHAPSKSCVSAH 803
           R R + A SR   Y+   ++Y H + S  C+S +
Sbjct: 479 RHRSNSAGSRFDAYEPIPQLYTHFSHSSECLSVN 512


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 628 SRLECHDDTDECQVYILDAEG 690
           SR EC DD DE   +  DA+G
Sbjct: 274 SRCECLDDLDEPTHFAYDAQG 294


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 268 ITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTL 396
           +  + T YN+   IG  GY + Y+       P+  ++ES+K L
Sbjct: 135 VRYIRTHYNDEFCIGVAGYPEGYS-------PDDDIDESIKHL 170


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 220 NLDITPPKETLQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTR 372
           N+  TP  ET+ + ++   +  D  E+ +     +   Y+Y GG L+ N R
Sbjct: 127 NIIPTPANETVPR-IKQPSIALDSLESPVSAPSRHQSTYSYKGGPLNYNLR 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,653
Number of Sequences: 5004
Number of extensions: 65877
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)