Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4f08
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0285 - 2316678-2317253 30 1.9
04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920 29 3.4
03_05_0421 + 24065725-24066052,24066811-24067040 29 4.5
01_07_0283 - 42467027-42467056,42467125-42467305,42467659-42467729 29 4.5
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 29 5.9
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 29 5.9
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649... 29 5.9
05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365... 29 5.9
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 29 5.9
06_02_0035 + 10816723-10819497,10819964-10820011 28 7.8
>08_01_0285 - 2316678-2317253
Length = 191
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/67 (22%), Positives = 28/67 (41%)
Frame = +1
Query: 580 TCNKSWRCGVSTSKMYSRLECHDDTDECQVYILDAEGNPINVTVDTALHRDGVSMILKQK 759
T + + RC +S + + DEC + + GN +V +RD ++L+
Sbjct: 122 TADDAKRCKLSADSLPDLVTAVSAVDECATKMFEESGNTTSVYATAITNRDWTVLVLRLA 181
Query: 760 STFTTRQ 780
+ RQ
Sbjct: 182 TLVVPRQ 188
>04_04_1454 - 33715782-33715797,33715887-33715918,33716582-33716920
Length = 128
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -1
Query: 190 ARCSAPPQRQNAPPPKARIKQ*RLPSRLCVSYRSL--GMTDLLVALRHLIYPTAIWPRD 20
AR PP RQ PP+A + +P + Y SL D L +LR + + W R+
Sbjct: 65 ARAVPPPPRQQGEPPRAEALRRLVPGGAGMEYSSLLEETADYLRSLRAQVRLLSDWGRN 123
>03_05_0421 + 24065725-24066052,24066811-24067040
Length = 185
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 222 LGHYPAQG-NAAKGRGNH-HRGDGLQRKRDYWLQGVLPGVCVQRRLAGSQHTR 374
+G +P+ G GRG HRG+ L R R + PG V RR A + R
Sbjct: 1 MGDWPSAGARLGDGRGEAGHRGEALARARPAIRKRRRPGALVNRRRATPRFAR 53
>01_07_0283 - 42467027-42467056,42467125-42467305,42467659-42467729
Length = 93
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 586 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTV 711
N W+ V ++++ + DD Q+ +LDAEGN I V V
Sbjct: 49 NDRWKIKVKVTRLWDAVNPTMADDFYGIQMIVLDAEGNSIRVKV 92
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 586 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 723
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 14 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 586 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 723
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 14 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 61
>06_03_0049 +
15961706-15962017,15962952-15963851,15964769-15964913,
15964969-15965705
Length = 697
Score = 28.7 bits (61), Expect = 5.9
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +1
Query: 562 NHFAYHTCNKSWRCGVSTSKMYSRLECHDDTDECQVYILDAEGNPINVTVDTALHR--DG 735
++ A+ T K W+CG MY E + D C +L +VD R +
Sbjct: 77 HYSAFRTQAKIWQCGFFWPTMY---EDSKEFDYCDTRLLPFPQRSRKPSVDEQFTRFVEV 133
Query: 736 VSMILKQKSTFTTRQVKAACLLIKDDKNN 822
+ I F T QV +KD NN
Sbjct: 134 IQKIHINMPLFDTMQVPTYACYLKDILNN 162
>05_06_0126 -
25834129-25834214,25834595-25834658,25836201-25836521,
25836912-25837040,25837118-25837177,25837251-25837548,
25837622-25837776,25837959-25838097,25838185-25838266,
25838337-25838455,25838537-25838664,25838810-25838983,
25839052-25839203,25839393-25839425,25840362-25841331,
25841412-25841537
Length = 1011
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 586 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 723
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 392 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 439
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 586 NKSWRCGVSTSKMYSRLE--CHDDTDECQVYILDAEGNPINVTVDTAL 723
N WR V +++ + D+ Q+ +LDAEGN I+V++ L
Sbjct: 193 NDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQL 240
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 228 HYPAQGNAAKGRGNHHR-GDGLQRKRDYW 311
H +G AA G HHR GD + ++ YW
Sbjct: 242 HAAEEGGAAAAAGGHHRAGDPVLQEGHYW 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,271,118
Number of Sequences: 37544
Number of extensions: 471834
Number of successful extensions: 1528
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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