Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4f07
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 32 0.049
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 29 0.34
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 29 0.60
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 1.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 4.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 4.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 4.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 4.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 4.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 4.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 4.2
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 4.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 4.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 4.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 4.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 4.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 4.2
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 7.4
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.4
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 25 9.8
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 25 9.8
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 32.3 bits (70), Expect = 0.049
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 217 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 396
D D SL + V N+ +ND+I N+ + +LS D + TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254
Query: 397 HRFVDDNVLTQDE 435
++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 217 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 384
D D + L R+ +F+ND + + +K + S R+ V L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 29.5 bits (63), Expect = 0.34
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +1
Query: 280 NDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFL 459
+D++ +T D N+ ++ + F I ALL + ++F+DDN T S + F
Sbjct: 308 SDRLDAASQTTDFVNQWTKESLFFQICALLTTALIL--ANKFLDDNTFTNQSWSQVTGFR 365
Query: 460 VTKLDEAYQ 486
L+ Q
Sbjct: 366 TALLNSFEQ 374
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 202 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 369
+QV+PD S + R++N F+ND E + KL + + +S R++ + +L
Sbjct: 46 KQVHPDTGISNQAMRILNSFVNDIFERIATEASKLA-AYNKKSTISSREIQTAVRLIL 102
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 473 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 375
SSF+ RKF LSSS ++ L++ N++ T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 491 GNWYASSSFVTRKFAKKLSSSCVKTLSST 405
G WY+ S T K+L SC L ST
Sbjct: 665 GWWYSVESSSTAYLLKQLEKSCTLALKST 693
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = +1
Query: 268 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 366
+EIEN+ + K VET+D + K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNISRIEYSSNKFLNHTRK 249
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 467 NWTKHTNCRRIN-SKINKNENKFVQYTKK 550
N T N R+ N S+I + NKF+ +T+K
Sbjct: 221 NTTNSRNLRKTNVSRIEYSSNKFLNHTRK 249
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2
Query: 164 CPWSKPLLAIG 196
CPW K LLA+G
Sbjct: 340 CPWQKSLLAVG 350
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 22 LEIEQALDAILNKNTSSID***VLVKMSNLMKNFFTE 132
+ +E LD ++N ++ +L+KMS++MK TE
Sbjct: 283 MSLESPLDIVVNAGAIALP---ILLKMSSIMKKKHTE 316
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 76 LLSWYFCLKSHQA 38
LL+WYFC + H +
Sbjct: 175 LLNWYFCTQEHDS 187
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 497 INSKINKNENKFVQYTK 547
INS KN++K++++TK
Sbjct: 584 INSDFTKNKDKYIKFTK 600
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,102
Number of Sequences: 5004
Number of extensions: 34810
Number of successful extensions: 130
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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