Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e23
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.46 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.46 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.46 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.46 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.46 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.46 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.46 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.46 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.80 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.80 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   3.2  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   3.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   4.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   5.7  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   5.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.7  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.5  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   7.5  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   7.5  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   7.5  
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      21   9.9  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPA 170


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 77  APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 126


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 185 AVPASGPVHPLQV-NNSNAQNTCTLTRNQTEPTESSGRPQSSSIHPLHESPA 337
           A P S P  PL   +NSNA  +  LT   +  T   G+P +S+      SPA
Sbjct: 121 APPRSTP--PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPA 170


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 QTEPTESSGRPQSSSIHPLHESPACRARCDHSKFPG 373
           +T P E+S  PQS+S +      AC+    +++FPG
Sbjct: 152 KTSPNEASMSPQSTSSNNSASPKACQFL--YNQFPG 185


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 QTEPTESSGRPQSSSIHPLHESPACRARCDHSKFPG 373
           +T P E+S  PQS+S +      AC+    +++FPG
Sbjct: 172 KTSPNEASMSPQSTSSNNSASPKACQFL--YNQFPG 205


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 130 VSTFNKRKCYDAARSTSRRCTGV---RASPSASSQQLKRPKYLHPYTQP 267
           VS   KR+  D  ++ S   +G     +SPS+ + Q  +  Y  P TQP
Sbjct: 39  VSQIVKREPMDEDKNDSGVTSGSDFHSSSPSSDTSQDLQHSYQSPQTQP 87


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 331 GFVKWMDAT*LWATRALGWFSLVACKGASILG 236
           GF  W+     W +  +GW  +   K A I G
Sbjct: 477 GFAGWVTDGNNWCSPYIGWQKVYENKPAKIAG 508


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 375 SPGNLEWSHLALQAGDS*SGWMLLDCGRPELSVG 274
           SP + EW    L A  S + W+L      +L++G
Sbjct: 220 SPLDGEWQRDNLNANSSITHWILSGADPQKLAIG 253


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 583 GASPVISNLNSFCPAL 536
           GA+P +S    F PAL
Sbjct: 382 GAAPAVSKARQFLPAL 397


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 583 GASPVISNLNSFCPAL 536
           GA+P +S    F PAL
Sbjct: 207 GAAPAVSKARQFLPAL 222


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 348 DVTTPSFPDSVSE 386
           DV TPS P S+SE
Sbjct: 59  DVPTPSSPRSISE 71


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 215 LQVNNSNAQNTCTLTRNQTEPTESSGRPQSSS 310
           LQ+ N   +    L  +Q+ P  SSG   SSS
Sbjct: 358 LQLINEMKKRYSALINSQSCPITSSGSTDSSS 389


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 466 VLSVSISRTTSSAATLSPTFL 404
           VL+V     TSS A  SP FL
Sbjct: 19  VLAVVFQEITSSPAGRSPAFL 39


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 466 VLSVSISRTTSSAATLSPTFL 404
           VL+V     TSS A  SP FL
Sbjct: 19  VLAVVFQEITSSPAGRSPAFL 39


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 466 VLSVSISRTTSSAATLSPTFL 404
           VL+V     TSS A  SP FL
Sbjct: 19  VLAVVFQEITSSPAGRSPAFL 39


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 227 NSNAQNTCTLTRNQTEPTESSG 292
           N  AQN  T  R Q +   SSG
Sbjct: 39  NQTAQNVDTFVREQIDFVGSSG 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,068
Number of Sequences: 336
Number of extensions: 3286
Number of successful extensions: 24
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)