Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e22
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    54   1e-08
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    50   3e-07
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    49   7e-07
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    30   0.35 
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.81 
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    28   1.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    28   1.4  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    27   2.5  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    27   3.3  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   4.3  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   5.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.7  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   7.6  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   7.6  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    25   7.6  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   10.0 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   10.0 
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c...    25   10.0 
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   10.0 

>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +3

Query: 564 SRYHREFEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           SRY  +FEEL  +  GG+GSV+KAR++ DGVEYA+KK
Sbjct: 218 SRYASDFEELELLGKGGYGSVYKARNKFDGVEYALKK 254


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 22/37 (59%), Positives = 27/37 (72%)
 Frame = +3

Query: 564 SRYHREFEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           SRY  +FEEL F+  GGFG V K ++R+DG  YAVKK
Sbjct: 550 SRYETDFEELEFLGRGGFGEVVKVKNRIDGRFYAVKK 586


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +3

Query: 564 SRYHREFEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           SRY  +FEE   +  GGFGSV+  R+++DG EYA+KK
Sbjct: 165 SRYIEDFEEYSLLGRGGFGSVYHVRNKIDGAEYAMKK 201



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +3

Query: 300 LLVQSLVKQLCSLLQKDSIIANQLYNKICEKLHSMNLIDNSYAMGEFEAMRSQYQRALYQ 479
           +L+ +L++  C L   +   + +L+  IC  L  + +++  Y + E  A+RS YQ AL+ 
Sbjct: 41  MLLTALLENFCQLYDNNPAKSKRLFALICHTLQKIGILEEEY-IEELAAVRSNYQDALHH 99

Query: 480 LVTVA 494
           L+  A
Sbjct: 100 LILQA 104


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 582 FEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           ++++  I  G +G V+KARH+L G   A+KK
Sbjct: 4   YQKVEKIGEGTYGVVYKARHKLSGRIVAMKK 34


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 579 EFEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           E+E +  I  G +G V  A H+  G++ AVKK
Sbjct: 38  EYEMINLIGQGAYGVVCAALHKPSGLKVAVKK 69


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 609 GGFGSVFKARHRLDGVEYAVKK 674
           G FG V+K++ R DG  YA+K+
Sbjct: 45  GTFGEVYKSQRRKDGKVYALKR 66


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 498 GTEIPIILPATWPIVQPSGLEWSRYHREFEELYFIAGGGFGSVFKARHRLDGVEYAVK 671
           G  +P   P    IV  S  E    + +++ L  I+ G FGSV+ A+ R  G  +A+K
Sbjct: 562 GLRLPSPSPRIHTIVPNSAPEHPSIN-DYKILKPISKGAFGSVYLAQKRTTGDYFAIK 618


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 600 IAGGGFGSVFKARHRLDGVEYAVK 671
           I  G +G V+KA    DG  YAVK
Sbjct: 24  IGAGAYGVVYKAEDIYDGTLYAVK 47


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 582 FEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           + +L  I  G FG V  A+ +L G+  AVKK
Sbjct: 20  YSDLQPIGMGAFGLVCSAKDQLTGMNVAVKK 50


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +3

Query: 360 ANQLYNKICEKLHSMNLIDNSYAMGEFEAMRSQYQRALYQLVTVASG 500
           A QL NK+ E LHS +L  N     E  +     QR L  L+    G
Sbjct: 508 ATQLLNKLVECLHSSDLGLNDTTPNEKLSTEYNQQRLLLALILYELG 554


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 573 HREFEELYFIAGGGFGSVFKARHR 644
           H +F+ +  +  GG+GSV+ AR R
Sbjct: 205 HGDFQTITQVGQGGYGSVWLARKR 228


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 23/101 (22%), Positives = 43/101 (42%)
 Frame = +3

Query: 180 ALATVKSFDLGISASHHESFVQQSRQQIDVINAPTTTPISLLVQSLVKQLCSLLQKDSII 359
           AL  VK   L +S S  E     ++ +   I         L +   V++  S+    + +
Sbjct: 469 ALTEVKHLKLCLSDSQEELLQLNAKLEKANIVIDELNSAKLKLSKQVEEESSMKDDLTEM 528

Query: 360 ANQLYNKICEKLHSMNLIDNSYAMGEFEAMRSQYQRALYQL 482
             +L  +I    + +N    S  + EFE +++QY++ L  L
Sbjct: 529 NQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNL 569


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 486 TVASGTEIPIILPATWPIVQPS 551
           T  S   IP +LP T P+++PS
Sbjct: 644 TSTSHIPIPTVLPPTQPVLEPS 665


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 366 QLYNKICEKLHSMNLIDNSYAMG 434
           Q+Y ++C   HS+NLI   + +G
Sbjct: 96  QVYREVCSACHSLNLIAWRHLVG 118


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 582 FEELYFIAGGGFGSVFKARHRLDGVEYAVK 671
           FE+++ +  G  G V+  R +  G  YA+K
Sbjct: 195 FEKVFLLGKGDVGRVYLVREKKSGKFYAMK 224


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/36 (19%), Positives = 20/36 (55%)
 Frame = +2

Query: 20  KDGKIKMHFANRVNASVRWHWPDFYELKILKTSNFD 127
           ++ K+  H  +   ++  ++WP  +++ +L   +FD
Sbjct: 92  RESKLVSHVCSLFTSAFVFNWPKHFDIPLLSLPSFD 127


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 576 REFEELYFIAGGGFGSVFKARHRLDGVEYAVK 671
           +++E +  I+ G FG+V+ +R    G  YA+K
Sbjct: 562 QDYEIIKPISKGTFGTVYLSRKNTTGEIYAIK 593


>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 169

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +3

Query: 372 YNKICEKLHSMN-----LIDNSYAMGEFEAMRSQYQRALYQ 479
           YN I  +L S+N     +    YA+ EF+A+   +++ L Q
Sbjct: 80  YNSINAELESVNSKISSISSQEYALEEFQALSQNFEKNLVQ 120


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 259 CCLLCCTNDSW*LADM 212
           C   CCT++ W LAD+
Sbjct: 357 CIKYCCTSNGWSLADI 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,414
Number of Sequences: 5004
Number of extensions: 50807
Number of successful extensions: 176
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)