Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e22
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   2e-05
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_23777| Best HMM Match : Pkinase (HMM E-Value=0.065)                 31   0.64 
SB_17071| Best HMM Match : Pkinase (HMM E-Value=0.065)                 31   0.64 
SB_57520| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_47182| Best HMM Match : Pkinase (HMM E-Value=1e-09)                 29   2.6  
SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)               29   3.4  
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)                 29   4.5  
SB_11865| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.7e-07)           28   7.9  

>SB_4446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/68 (30%), Positives = 42/68 (61%)
 Frame = +3

Query: 291 PISLLVQSLVKQLCSLLQKDSIIANQLYNKICEKLHSMNLIDNSYAMGEFEAMRSQYQRA 470
           P  LL+ SL++ LCSL + D   + Q+++ +C++L  M ++ +   + EF  +R++Y++A
Sbjct: 72  PNYLLLVSLLEHLCSLYENDPEKSQQIFSVLCQQLAKMEVMPSFSFLEEFSVIRAKYKKA 131

Query: 471 LYQLVTVA 494
              L+  A
Sbjct: 132 FSDLMQAA 139


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +3

Query: 564 SRYHREFEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           SR   EFE+L F+  GGFG+V K R++LDG  YA+K+
Sbjct: 578 SRIKSEFEQLEFLGKGGFGNVIKVRNKLDGGLYAIKR 614


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +3

Query: 564 SRYHREFEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           SRY  +FE    +  GGFG VF+AR+++D  +YA+K+
Sbjct: 445 SRYLTDFEHELCLGKGGFGLVFQARNKVDDCQYAIKR 481


>SB_23777| Best HMM Match : Pkinase (HMM E-Value=0.065)
          Length = 97

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 582 FEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           FE+L  I  G +G VFK RH+  G   A+KK
Sbjct: 4   FEKLGKIGEGSYGVVFKCRHKETGQIVAIKK 34


>SB_17071| Best HMM Match : Pkinase (HMM E-Value=0.065)
          Length = 97

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 582 FEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           FE+L  I  G +G VFK RH+  G   A+KK
Sbjct: 4   FEKLGKIGEGSYGVVFKCRHKETGQIVAIKK 34


>SB_57520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
 Frame = +3

Query: 246 QSRQQIDVINAPTTTPISLLVQSLVKQLCSLLQKDSII--ANQ-------------LYNK 380
           + RQ+ D IN  T   ISL +Q  + +L   + K+ ++   NQ             LYN 
Sbjct: 67  EDRQRADDINNSTKDKISLFIQDKLYRLQDSVVKEDLVQKCNQFRGDKGKKADLINLYNL 126

Query: 381 ICEKLHSMNLIDNSYAMGEFE 443
           +CE+L S   ++N   + E E
Sbjct: 127 VCEELSSQEELENESLVIETE 147


>SB_47182| Best HMM Match : Pkinase (HMM E-Value=1e-09)
          Length = 198

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 582 FEELYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           F+ L  +  G +GSVFKA H+  G   A+K+
Sbjct: 24  FDVLEKLGEGSYGSVFKAMHKESGQVVAIKQ 54


>SB_28305| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0054)
          Length = 425

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 201 FDLGISASHHESFVQQSRQQIDVINAPTTTPISLLVQSLVKQLCSLLQKDSIIANQLYNK 380
           FDL      H SF + S ++  + N P    I +   S+    C++  K SI+ +   +K
Sbjct: 194 FDLWNLIDSHRSFEKDSDEERHINNLPNCVGIVISAPSVQSMTCAIWVKMSILVDATLSK 253


>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
          Length = 827

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 591 LYFIAGGGFGSVFKARHRLDGVEYAVKK 674
           LY +A G FG +FKA H++      +K+
Sbjct: 291 LYRLANGFFGEIFKAEHKITKKTMVIKE 318


>SB_11865| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.7e-07)
          Length = 184

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 600 IAGGGFGSVFKARHRLDGVEYAVKK 674
           +  GGFGSVF+ ++R  G + AVKK
Sbjct: 50  LGSGGFGSVFEGKYR--GKKVAVKK 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,629
Number of Sequences: 59808
Number of extensions: 353608
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)