Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e21
         (586 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    24   1.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   1.9  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   7.7  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 374 SLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNFDAASLASVLFEKSL 517
           +L +    I R +  V    VTS   W  +ND+++       L ++ L
Sbjct: 238 ALAYRFGQITRRIAAVASEKVTSEKSWIALNDDYNRLCHLCFLLDEKL 285


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 407 NVVDVIKCSVTSVAQWNKINDNFDA 481
           N++ VIK S   +  W  +  +FDA
Sbjct: 486 NLLSVIKSSFLDINTWKMLVKSFDA 510


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/37 (18%), Positives = 19/37 (51%)
 Frame = +2

Query: 365 RVESLHFNVYSINRNVVDVIKCSVTSVAQWNKINDNF 475
           ++ S   +++ +   V  ++   + +  QW+ +N NF
Sbjct: 17  KIVSFVNSIFLVMSAVTIILSSLIFNQEQWSSLNKNF 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,802
Number of Sequences: 336
Number of extensions: 2308
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)