Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e21
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)              32   0.30 
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)              31   0.69 
SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)              27   8.5  

>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
          Length = 688

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 21/116 (18%), Positives = 47/116 (40%)
 Frame = +2

Query: 239 FMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRNVVD 418
           F+ P  ++ +   + L TCKH  C  C           CP+CR       ++        
Sbjct: 481 FVMPTCQVKLAKQIMLRTCKHIFCEDCISLWFDREQT-CPMCRARVAGDPMWRDGTTAAA 539

Query: 419 VIKCSVTSVAQWNKINDNFDAASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQA 586
           V + SV +++ + + + +   + L +  F ++L    +D    ++    + + S +
Sbjct: 540 VARLSVATLSGFRQEDSHPWQSPLMAYKFGQNLTVTGQDKRRGSHDKRELFAYSNS 595


>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
          Length = 337

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 293 CKHQLCSMCXXXXXXXXXXPCPLCRV 370
           C+H+ C MC           CP+CR+
Sbjct: 52  CEHEFCKMCFTQNVQEANLQCPMCRI 77


>SB_47411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 200 CNICFSVAEIK-NYFMQPIDRLTIIPVLELDTCKHQLC 310
           C   ++   +K   F QP  RL+ IPV+E   C H +C
Sbjct: 33  CQFVYASVLLKFTNFTQPCPRLSGIPVVEASVCHHIIC 70


>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 883

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 55  CETTLYXEQIRTLLWAAASAHWQVLRLVLFS 147
           C+T    +Q  TL+   A A W+++ +VLFS
Sbjct: 549 CQTFAKAQQKETLIAIEAKAPWEIVGVVLFS 579


>SB_9027| Best HMM Match : Phage_fiber_2 (HMM E-Value=5.8)
          Length = 320

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 482 ASLASVLFEKSLLDDAEDSNNAANSDDTMLSESQA 586
           A  A ++   S+ DD+E++ N A++DDT+  +  A
Sbjct: 2   AQAAGLVQYDSITDDSEETENHASTDDTVKKKVHA 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,945
Number of Sequences: 59808
Number of extensions: 272995
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)