Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4e19
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.29
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.29
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.39
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 0.90
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 2.1
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 2.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 2.7
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 3.6
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 3.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.6
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 4.8
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 8.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.4
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.5 bits (63), Expect = 0.29
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 36 AFIHXRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 215
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 216 FDTEALVNF 242
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.29
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = -1
Query: 250 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 77
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 76 KLVTSGW---NLXCIKANVLN 23
+ T+GW N C+ V N
Sbjct: 237 TVNTNGWTSSNFKCVDDVVAN 257
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.39
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 267 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 386
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 0.90
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 228 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 374
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = +3
Query: 279 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 458
F S +NTT +DD+ ++ D + E + L+ +V H + ++ Y
Sbjct: 795 FKPSNHENTTSNDDHAMDEDLDDSPEEETLKDEEEIGIRLAHLIFLVGHVAIKQLVYIEY 854
Query: 459 XVFEYCKSLTD 491
E+ + D
Sbjct: 855 CEAEFKRRKAD 865
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 128 GNACVISFSDHKLHFVSKISNK 63
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 345 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 446
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 3.6
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 210 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 371
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 372 ITEVE 386
+ E E
Sbjct: 65 LNESE 69
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 131 SGNACVISFSDHKLHFVSKISNKW 60
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 274 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 158
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = +3
Query: 234 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 395
++ E++ +V G++KRK N ++ E+N++P D+ LSD + +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185
Query: 396 YLTLLLI-VEHAYLHYY 443
L L+ + ++H ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 270 AKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITE 380
+ T+ A R +D++ KQP Y + SDF IT+
Sbjct: 398 SSTYKADDDSIYHRKEDFK--KQPSYPVLTSDFEITD 432
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 8.4
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -1
Query: 250 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGS--PGMLVSLVSVTTNSILLV 77
S S + +S S+S S+ S+ H+S+ S S + S P S ++ ++S +
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIS 251
Query: 76 KL-VTSGWNLXCIKANVLNTTAAI 8
+ VT + + V ++TAA+
Sbjct: 252 TVTVTPSSSSSSTSSEVPSSTAAL 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,460
Number of Sequences: 5004
Number of extensions: 34362
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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