Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e19
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.40 
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   3.7  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   3.7  
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   4.9  
SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)            27   6.5  
SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = -1

Query: 268 IRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTN 92
           +  L  S  +F +   +NS    LT++ L  + + T + S    +G   ++VS+ SVTTN
Sbjct: 737 VTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTN 796

Query: 91  SILLVKLVTSGWNLXCIK 38
           S++LV ++ +   L C++
Sbjct: 797 SLILVVIIKN--PLRCLR 812



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -1

Query: 136 GSPGMLVSLVSVTTNSILLVKLVTSGWNLXCIK 38
           G   ++VS+ ++TTNS+LLV ++ +   L C++
Sbjct: 413 GIVSIIVSITAITTNSLLLVVIIKN--PLHCLR 443


>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 207 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQP 341
           S E + +ALV   +DN N +IAK  G+S+  +T    +Y   K P
Sbjct: 183 SVEREIQALVGKSDDNTNKKIAKMDGSSQIPDTLLPSEYHIVKNP 227


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -2

Query: 438  NANRHVRRSATELDIEWLQ-PQLC*NRSNPYR--NLVVYLTRNHRCASCFCA*RRQTSWL 268
            N   H+ R A ++  +    P  C  R   Y+  N +++ ++N +C    CA  +  +W 
Sbjct: 1305 NCEHHLTRLALKIHRDRKSHPLNCYYRGRMYQTGNKIIHRSKNGKCYRAICAGGKIANWR 1364

Query: 267  SARC 256
            SA C
Sbjct: 1365 SAVC 1368


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 102 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 209
           +E  D SI   P +   N G L+C VDR SI ++ S
Sbjct: 37  SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -1

Query: 268 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTT 95
           I +++LS S  T   +S++ ++LS L+   LST   STPS S      P    +   V  
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPS---TTWKVFR 239

Query: 94  NSILLVKLVTSG 59
             +LL + V  G
Sbjct: 240 TKVLLERSVKEG 251


>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 939

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 282 GASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIV 419
           G SKRK+ TR  ++  N + DY +  S   +  +E    L ++L +
Sbjct: 18  GGSKRKHHTRLKEHTLNSKQDYKLCNSSLVMKSLEWRTVLFIVLCI 63


>SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)
          Length = 476

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 217 NSRLSILTIDGLS-TEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILL 80
           NS+ +    D  S T H + PS+ V+  G  GM V + + TT S +L
Sbjct: 113 NSKPTQQVCDSFSLTPHTTLPSYVVSHAGLAGMRVRIPNCTTWSEIL 159


>SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 303 TTRSDDYESNKQPDYDMDLSDFSITEVEAT 392
           TT++    S KQP YD   ++F+I E   T
Sbjct: 22  TTKAGGTNSRKQPAYDTSRTEFNIDEGNVT 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,465
Number of Sequences: 59808
Number of extensions: 267291
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)