Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e19
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    29   1.4  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   1.9  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   3.3  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z47812-10|CAH04720.1|  979|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z47812-5|CAA87792.1|  980|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z77670-3|CAE17973.1|  201|Caenorhabditis elegans Hypothetical pr...    27   10.0 
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    27   10.0 
U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AC024798-1|AAK29914.3|  722|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -1

Query: 211 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 74
           RL+I  I GLS+  +STPS  V++   P  L S+V++     L  +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 405 LLLIVEHAYLHYYIFKNYXVFEYCKSLTDHS 497
           LL+I+      YYIF+   + E C S T HS
Sbjct: 85  LLIIISFIIYFYYIFQASFIHEKCTSPTSHS 115


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 99   VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 200
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 99   VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 200
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 193 IDGLSTEHNSTPSFSVNKMGSPGML 119
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 127 PENPFCLQKTRGCCCAPSTD 186
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 193 IDGLSTEHNSTPSFSVNKMGSPGML 119
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 EALVNFENDNC-NVRIAKTFGASKRKNTTRSDDYESN 332
           EA+ N ++DN  +  + KTFG +   +++ SD+  SN
Sbjct: 39  EAVKNLKDDNVLSKALVKTFGLNSSSSSSLSDESSSN 75


>Z47812-10|CAH04720.1|  979|Caenorhabditis elegans Hypothetical
           protein T05H10.5c protein.
          Length = 979

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 315 DDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVE 422
           +D ++  QP   MD+SD S+ +VE+  +LT L   E
Sbjct: 3   EDEKAGLQP---MDISDASVADVESKDFLTSLFDCE 35


>Z47812-5|CAA87792.1|  980|Caenorhabditis elegans Hypothetical
           protein T05H10.5a protein.
          Length = 980

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 315 DDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVE 422
           +D ++  QP   MD+SD S+ +VE+  +LT L   E
Sbjct: 3   EDEKAGLQP---MDISDASVADVESKDFLTSLFDCE 35


>AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical
           protein W03G1.6b protein.
          Length = 722

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/94 (22%), Positives = 41/94 (43%)
 Frame = +3

Query: 54  FHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREFDTEAL 233
           ++ L+    N ME ++    +++    P     N   +LCS   P+I   L    D   L
Sbjct: 320 YYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNLDKSGL 371

Query: 234 VNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 335
            + ++D  ++  +    A  +KN   SD+  S++
Sbjct: 372 EDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405


>AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical
           protein W03G1.6a protein.
          Length = 726

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/94 (22%), Positives = 41/94 (43%)
 Frame = +3

Query: 54  FHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREFDTEAL 233
           ++ L+    N ME ++    +++    P     N   +LCS   P+I   L    D   L
Sbjct: 320 YYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNLDKSGL 371

Query: 234 VNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 335
            + ++D  ++  +    A  +KN   SD+  S++
Sbjct: 372 EDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405


>Z77670-3|CAE17973.1|  201|Caenorhabditis elegans Hypothetical
           protein W05E10.5 protein.
          Length = 201

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 237 NFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPD--YDMD 356
           N +ND  +V+ +K+F AS   N T +  Y      D  YD++
Sbjct: 98  NNKNDCKSVKTSKSFNASSMANHTMTKQYTEQNHNDQYYDVE 139


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1613

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +3

Query: 285  ASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYY-IFKNY 458
            + ++K   R+ D + N  P+Y++ +    + ++ A     L    EH    Y+ + K Y
Sbjct: 1178 SKEQKKYERNMDRQFNGMPEYELLIKAARLNQINAVAEYKLTRETEHVLARYFDLVKTY 1236


>U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical
           protein K06A1.6 protein.
          Length = 937

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 315 DDYESNKQPDYDMDLSDF-SITEVEATQYLTLLLIVEHAYLHYYIFKNYXVFEY 473
           D +E  K   Y++ + +  S  E+++ + L   L+VEH  L Y   KN+   +Y
Sbjct: 794 DCFERLKDTAYEIGIVNVESEAELDSARVLIQRLLVEHNSLPYEPDKNWRFLDY 847


>AC024798-1|AAK29914.3|  722|Caenorhabditis elegans Hypothetical
           protein Y48G9A.10 protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 51  RFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEG 161
           R    VT +T+ M+FV++E    ++      F  +EG
Sbjct: 135 RLEDTVTRYTDSMKFVISEEEHNNLIATSTQFLSHEG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,594,059
Number of Sequences: 27780
Number of extensions: 194960
Number of successful extensions: 557
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)