Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4e19
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g28250.1 68418.m03425 Ulp1 protease family protein contains P... 30 1.00
At4g29560.1 68417.m04215 expressed protein 30 1.00
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 29 1.3
At4g11070.1 68417.m01798 WRKY family transcription factor other ... 29 1.7
At5g49555.1 68418.m06133 amine oxidase-related contains Pfam pro... 28 4.0
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 27 5.3
At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR... 27 7.0
At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR... 27 7.0
At4g16130.1 68417.m02444 GHMP kinase family protein contains GHM... 27 7.0
At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR ... 27 7.0
At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR ... 27 7.0
At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containi... 27 7.0
At2g37930.1 68415.m04656 expressed protein 27 7.0
At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing ... 27 9.3
At3g63180.1 68416.m07097 expressed protein 27 9.3
At3g42850.1 68416.m04489 galactokinase, putative contains some s... 27 9.3
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 27 9.3
At1g74770.1 68414.m08663 expressed protein 27 9.3
>At5g28250.1 68418.m03425 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 939
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 285 ASKRKNTTRSDDYESNKQPDYDMDL-SDFSITEVEATQYLTLL 410
A + N T S D ESN P Y L SDF++ + Q ++ +
Sbjct: 408 ADESNNETASGDQESNPPPSYSRPLHSDFNLPSFQGDQAISTI 450
>At4g29560.1 68417.m04215 expressed protein
Length = 493
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -1
Query: 223 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWN 53
+SN L D + +S P + K+GS G ++ + V+ + + LV WN
Sbjct: 135 ISNLDLDSADEDSMKQVFDSVPDWLSEKLGSAGTILPWLPVSCDDVDSEMLVVDSWN 191
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 179 DGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 60
DG+ PL+ G C++ F D +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836
>At4g11070.1 68417.m01798 WRKY family transcription factor other
putative proteins, Arabidopsis thaliana
Length = 313
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 223 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 92
VS+ + +IL ++G +T+HN T + + + PG + S S+T N
Sbjct: 53 VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97
>At5g49555.1 68418.m06133 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 556
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 200 FNDRRSVDGAQQHPLVFCKQNGFS-GNACVISFSDHKLHFVSKISNKWMESXVYKS 36
FND+ S + C + S G+ +++F D L SK+ N W ES V K+
Sbjct: 163 FNDKLSNKMYKSAFWARCLRQAVSLGHKDMVAFMDLLLAPASKVLNNWFESDVLKA 218
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 207 SREFD---TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 335
S+E+D TEA N END KT A+ ++N T+ D + +
Sbjct: 302 SKEYDEKTTEAEANKENDTQESDEKKTEAAANKENETQESDVKKTE 347
>At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1049
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 207 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSD-DYESNKQ 338
SR + E L+ F+ND C VR+ G + TT +D Y+ N Q
Sbjct: 197 SRSKELEKLLMFDNDEC-VRVVGVLGMTGIGKTTVADIVYKQNFQ 240
>At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1049
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 207 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSD-DYESNKQ 338
SR + E L+ F+ND C VR+ G + TT +D Y+ N Q
Sbjct: 197 SRSKELEKLLMFDNDEC-VRVVGVLGMTGIGKTTVADIVYKQNFQ 240
>At4g16130.1 68417.m02444 GHMP kinase family protein contains GHMP
kinases putative ATP-binding protein domain,
Pfam:PF00288
Length = 1039
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 327 SNKQPDYDMDLSDF 368
SN+ P +DMDLSDF
Sbjct: 624 SNRAPTFDMDLSDF 637
>At3g50950.2 68416.m05579 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +3
Query: 264 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYY 443
RIA+ F R NT+ +D+ S+ Q YD S + + Y +I + +H +
Sbjct: 381 RIAEHFQDELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGW 440
Query: 444 IFKNYXVFEYCKSLTD 491
I + + ++ +S T+
Sbjct: 441 IGEGFVMWRNGRSATE 456
>At3g50950.1 68416.m05578 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 852
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +3
Query: 264 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYY 443
RIA+ F R NT+ +D+ S+ Q YD S + + Y +I + +H +
Sbjct: 381 RIAEHFQDELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGW 440
Query: 444 IFKNYXVFEYCKSLTD 491
I + + ++ +S T+
Sbjct: 441 IGEGFVMWRNGRSATE 456
>At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q9FNS4 PsbB mRNA maturation
factor Mbb1, chloroplast precursor {Chlamydomonas
reinhardtii}; contains Pfam profile: PF00515: TPR Domain
Length = 652
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 231 LVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPD 344
L+NF +N N R+ T +N R+ D +SN+QP+
Sbjct: 569 LLNFGQNNDNNRLTTTL-----RNMNRTKDSQSNQQPE 601
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 45 HXRFHPLVTNFTNKMEFVVTETNDTSI-PGEPILF 146
H HP V +M+ V T T+D+SI E +LF
Sbjct: 270 HKNEHPFVHTIIGEMKTVTTFTSDSSIHKSETVLF 304
>At4g21080.1 68417.m03048 Dof-type zinc finger domain-containing
protein prolamin box binding factor, Zea mays,
PATCHX:G2393775
Length = 249
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 177 VDRPSIVKMLSREFDTEALVNFENDNCNVRIAKTFGAS 290
V++PS+ +M+S E F N NV + +FGAS
Sbjct: 81 VNQPSVARMVSVETQRGNNQPFSNVQENVHLVGSFGAS 118
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 250 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSP 128
S K + VSNS+ +L+ LS EH P+ + SP
Sbjct: 916 SHGKPANSKVSNSKALLLSPVPLSQEHTENPASGSTQKNSP 956
>At3g42850.1 68416.m04489 galactokinase, putative contains some
similarity to galactokinase [Pasteurella multocida]
SWISS-PROT:P57899
Length = 964
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 327 SNKQPDYDMDLSDF 368
SN+ P +DMDLSDF
Sbjct: 555 SNRGPTFDMDLSDF 568
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 186 PSIVKMLSREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSD 365
P+ +++L+ F T V ++D CN+++ +T ++ + Y + P + LSD
Sbjct: 207 PTKLELLT--FFTSGPVQCDSDGCNLQLVRTPNSTLPPLINALEAYTIIEFPQLETSLSD 264
Query: 366 F-SITEVEATQYLT 404
+I ++AT L+
Sbjct: 265 VNAIKNIKATYRLS 278
>At1g74770.1 68414.m08663 expressed protein
Length = 985
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 232 KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVT 98
K + N S L T+H SF +N+M MLVS ++ T
Sbjct: 680 KGQLKNISHSFSIDHELETKHFDKVSFILNEMSELNMLVSTINTT 724
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,838,049
Number of Sequences: 28952
Number of extensions: 175478
Number of successful extensions: 507
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -