Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4e17
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id... 84 6e-17
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id... 84 6e-17
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo... 83 1e-16
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi... 75 2e-14
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 3.4
At3g62670.1 68416.m07040 two-component responsive regulator fami... 28 4.5
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta... 27 5.9
>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 83.8 bits (198), Expect = 6e-17
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +3
Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 344
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V + R+K+K+ +TAD FS
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75
Query: 345 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 452
DWLRV+A+ D YELRYF
Sbjct: 76 KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113
>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 83.8 bits (198), Expect = 6e-17
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +3
Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 344
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V + R+K+K+ +TAD FS
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75
Query: 345 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 452
DWLRV+A+ D YELRYF
Sbjct: 76 KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113
>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
ribosomal protein L22 (cytosolic), Rattus norvegicus,
PIR:S52084
Length = 124
Score = 83.0 bits (196), Expect = 1e-16
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Frame = +3
Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 344
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V + R+K+K+ +TAD FS
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75
Query: 345 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 452
DWLRV+A+ D YELRYF
Sbjct: 76 KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113
>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
to ribosomal protein L22 GI:710294 from [Rattus
norvegicus]
Length = 127
Score = 75.4 bits (177), Expect = 2e-14
Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +3
Query: 165 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFS 344
+ F IDC+ P +D+IL++ EK+L+E +KV GK L N V + R K+ + A+ FS
Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77
Query: 345 XXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 452
DWLRV+AS D YE+RYF
Sbjct: 78 KRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 183 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 293
C P E++++D+ +++K H +EG T+ LSN ++
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTII 434
>At3g62670.1 68416.m07040 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 426
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 231 KYLKEHVKVEGKT-NNLSNHVVVARDKTKVAITADIP 338
KY++E + V+G T NN+++H+ R +K T P
Sbjct: 244 KYMQEELNVQGLTRNNVASHLQKYRQSSKKTCTPQEP 280
>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
domain-containing protein simlar to AHM1 [Triticum
aestivum] GI:6691467; contains Pfam profile PF00226:
DnaJ domain
Length = 311
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 172 NFKLIFRLMPLPRILPPFTPFLPVFWCNWAFLAAGF 65
N + F +P+ LPP P ++C W F GF
Sbjct: 192 NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,139
Number of Sequences: 28952
Number of extensions: 164278
Number of successful extensions: 442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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