Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e16
         (261 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar...    48   4e-05
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary...    44   9e-04
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn...    37   0.077
UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus subti...    36   0.13 
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ...    34   0.72 
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta...    34   0.72 
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n...    33   0.95 
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=...    33   1.7  
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu...    32   2.2  
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa...    32   2.9  
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell...    31   3.8  
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;...    31   3.8  

>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
           Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
           (Human)
          Length = 69

 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 20/27 (74%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   KVEFIGETSRQIIRNVKGPVRDGDILT 82
           +VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 31  RVEFMDDTSRSIIRNVKGPVREGDVLT 57


>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
           Eukaryota|Rep: 40S ribosomal protein S28 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 68

 Score = 43.6 bits (98), Expect = 9e-04
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = +2

Query: 2   KVEFIGETSRQIIRNVKGPVRDGDIL 79
           +VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 30  RVEFMDDTSRSIIRNVKGPVREDDIL 55


>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
           Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 64

 Score = 37.1 bits (82), Expect = 0.077
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +2

Query: 2   KVEFIGETSRQIIRNVKGPVRDGDILT 82
           +V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 27  RVKFT-DSDRYIMRNVKGPVREGDILT 52


>UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus
           subtilis|Rep: VirD4-like protein - Bacillus subtilis
          Length = 796

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -3

Query: 97  FXFKKSEDVSVTDRSFHVPDDLTAXLPNE 11
           F FKKSE  SV +RS  +P++LT+  PNE
Sbjct: 569 FSFKKSETESVRERSLMLPEELTSIKPNE 597


>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
          protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
          ribosomal protein S28 - Pan troglodytes
          Length = 356

 Score = 33.9 bits (74), Expect = 0.72
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 2  KVEFIGETSRQIIRNVKGPV 61
          +V+F+ +TSR IIRNVKGPV
Sbjct: 31 RVKFMDDTSRSIIRNVKGPV 50


>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9;
          Fungi/Metazoa group|Rep: Ribosomal protein S28e -
          Aspergillus fumigatus (Sartorya fumigata)
          Length = 56

 Score = 33.9 bits (74), Expect = 0.72
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 2  KVEFIGETSRQIIRNVKGP 58
          +VEF+ +TSR IIRNVKGP
Sbjct: 30 RVEFMDDTSRSIIRNVKGP 48


>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
           Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
           Gallus gallus
          Length = 112

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 118 SQPPSFTFXFKKSEDVSVTDRSFHVPDDLTAXLPNEL 8
           +QPP      ++ EDVS+  R  HV DD  A + +EL
Sbjct: 56  AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHEL 92


>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
           Trypanosoma brucei|Rep: 40S ribosomal protein S33,
           putative - Trypanosoma brucei
          Length = 103

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +2

Query: 20  ETSRQIIRNVKGPVRDGDILT 82
           E +R I+RNVKGP ++GD+L+
Sbjct: 71  EANRTIVRNVKGPCKEGDMLS 91


>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
           organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
           kandleri
          Length = 74

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 20  ETSRQIIRNVKGPVRDGDIL 79
           +  R I RNVKGPVR+GDIL
Sbjct: 42  DKGRIITRNVKGPVREGDIL 61


>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
          Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
          jannaschii
          Length = 75

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +2

Query: 20 ETSRQIIRNVKGPVRDGDIL 79
          +T R ++RNVKGPV+ GDI+
Sbjct: 40 DTGRVLVRNVKGPVKVGDII 59


>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
           natans|Rep: Ribosomal protein S28 - Bigelowiella natans
           (Pedinomonas minutissima) (Chlorarachnion sp.(strain
           CCMP 621))
          Length = 65

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 2   KVEFIGETSRQIIRNVKGPVRDGDIL 79
           +V+ I    + +IRN+KGPVR GDI+
Sbjct: 30  RVKSITNIKKTLIRNIKGPVRIGDIV 55


>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
          n=2; Sordariomycetes|Rep: 40S ribosomal protein
          S28-like protein - Magnaporthe grisea (Rice blast
          fungus) (Pyricularia grisea)
          Length = 85

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 2  KVEFIGETSRQIIRNVKGP 58
          +VEF+ + SR IIRNVKGP
Sbjct: 30 RVEFMDDQSRSIIRNVKGP 48


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,118,750
Number of Sequences: 1657284
Number of extensions: 2619158
Number of successful extensions: 3990
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3990
length of database: 575,637,011
effective HSP length: 64
effective length of database: 469,570,835
effective search space used: 10330558370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)