Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e16
         (261 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    36   0.006
03_01_0468 - 3612079-3612197,3612679-3612850                           32   0.055
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376...    25   8.4  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 118 SQPPSFTFXFKKSEDVSVTDRSFHVPDDLTAXLPNEL 8
           +QPP      ++ EDV++TDR+  VP D T  +  EL
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEEL 641


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 118 SQPPSFTFXFKKSEDVSVTDRSFHVPDDLTAXLPNELD 5
           ++PP      ++ EDV++++R+  VP D T  +  ELD
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELD 47


>11_05_0097 -
           19036044-19036358,19036502-19036585,19036772-19037644,
           19038059-19038157
          Length = 456

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 251 MXCIYSELNTIRWSSLTVL*V*HINLCR 168
           + C+ S  N + W SLT   + H ++C+
Sbjct: 210 LQCLLSHCNVLEWLSLTQCSLQHRSICQ 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,470,271
Number of Sequences: 37544
Number of extensions: 71070
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)