Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e16
         (261 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    25   7.3  
SB_33310| Best HMM Match : DUF316 (HMM E-Value=5.5)                    25   7.3  

>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 11  FIGETSRQIIRNVKGPVRDGDILT 82
           F GET+ QI R V GP   G I T
Sbjct: 887 FPGETNGQIDRKVAGPFAPGVIAT 910


>SB_33310| Best HMM Match : DUF316 (HMM E-Value=5.5)
          Length = 353

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 255 FYXMYLFRAEYNKMVIFDGFVSLTHKFM*MVHVNAL 148
           FY  +L +     M   +G  SLT++F  M  +N L
Sbjct: 183 FYGFHLSKPRERSMTYSEGVTSLTNRFTSMPVINEL 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,414,790
Number of Sequences: 59808
Number of extensions: 87992
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)