Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e16
         (261 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    42   5e-05
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 20/28 (71%), Positives = 24/28 (85%), Gaps = 1/28 (3%)
 Frame = +2

Query: 2   KVEFIGE-TSRQIIRNVKGPVRDGDILT 82
           +VEFI +  +R IIRNVKGPVR+GDILT
Sbjct: 26  RVEFINDQNNRSIIRNVKGPVREGDILT 53


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 5   VEFIGETSRQIIRNVKGP-VRD 67
           +E++G    Q+IR +K P +RD
Sbjct: 270 IEYLGTPDEQVIRRIKSPSIRD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,816,998
Number of Sequences: 27780
Number of extensions: 65417
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)