Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e16
         (261 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo...    37   0.002
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi...    37   0.002
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)            36   0.004
At5g47910.1 68418.m05918 respiratory burst oxidase protein D (Rb...    25   5.2  
At5g56820.1 68418.m07090 F-box family protein contains F-box dom...    25   6.9  
At1g73580.1 68414.m08518 C2 domain-containing protein similar to...    25   6.9  

>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
           ribosomal protein S28, Arabidopsis thaliana,
           EMBL:ATRP28A
          Length = 64

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +2

Query: 2   KVEFIGETSRQIIRNVKGPVRDGDILT 82
           +V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 27  RVKFT-DSDRYIMRNVKGPVREGDILT 52


>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
           to ribosomal protein S28 GB:P34789 [Arabidopsis
           thaliana]
          Length = 64

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +2

Query: 2   KVEFIGETSRQIIRNVKGPVRDGDILT 82
           +V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 27  RVKFT-DSDRYIMRNVKGPVREGDILT 52


>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
          Length = 64

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +2

Query: 2   KVEFIGETSRQIIRNVKGPVRDGDILT 82
           +V+F  ++ R I+RNVKGPVR+GD+LT
Sbjct: 27  RVKFT-DSDRFIMRNVKGPVREGDVLT 52


>At5g47910.1 68418.m05918 respiratory burst oxidase protein D
           (RbohD) / NADPH oxidase identical to respiratory burst
           oxidase protein D from Arabidopsis thaliana [gi:3242789]
          Length = 921

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 29  RQIIRNVKGPVRDGDI 76
           + II N+KGP RD DI
Sbjct: 756 KDIINNMKGPDRDSDI 771


>At5g56820.1 68418.m07090 F-box family protein contains F-box
          domain Pfam:PF00646
          Length = 435

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 82 SEDVSVTDRSFHVPDDL 32
          SE+VS +DR  ++PDDL
Sbjct: 8  SEEVSYSDRISYLPDDL 24


>At1g73580.1 68414.m08518 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 168

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 117 DRLLQHYCIRLRH 155
           DR++QH C+RLR+
Sbjct: 135 DRIVQHICLRLRN 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,509,649
Number of Sequences: 28952
Number of extensions: 59478
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 12,070,560
effective HSP length: 65
effective length of database: 10,188,680
effective search space used: 213962280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)