Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e14
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   3.5  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            29   3.5  
SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)                 28   6.1  
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)          28   8.0  

>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 425 DAYHD-DGWFICNSHLIKRFKMSKMVLP--IFDEDDNQFKMTIARHLVGNKER 574
           DA  D  GW++    L+K+F+ S+M     + D+D   ++  +   L  NKE+
Sbjct: 186 DASSDFKGWYLLKKQLLKKFENSRMATKKLVSDDDGTPYRKKMKLSLKVNKEQ 238


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 383 SFDACITYKSPC-SPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLV 559
           SFD+ I   +P    ++ H  G  I  S +      S  V  IFD+DD    +T+ R+  
Sbjct: 316 SFDSGIVQNNPSFKSNSLHSVGQRITTSTITP----STTVNLIFDDDDGDGGLTVTRYAS 371

Query: 560 GNKERGI 580
           GN   G+
Sbjct: 372 GNAFSGV 378


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 437 DDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSA 604
           DD  F  NS   KR     + L +F +    F +T A  ++G+K R + R+LIP +
Sbjct: 141 DDAGFGPNSST-KRRPTFPVDLNLFQDLYMHFNLTEANLVLGSKVRNVLRVLIPKS 195


>SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)
          Length = 526

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 214 LNSYIVPNYSLAQQYFDLYDENGFRTRIP--IQSACNNIISSVKKTNSKHKK 65
           L S    NYS      ++Y++NGFR  +   I S    +ISS K+ + ++ K
Sbjct: 334 LGSVFKSNYSKGVTLEEVYNDNGFRNSLGFLIPSNITKLISSPKEKDYRNVK 385


>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
          Length = 673

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 220 KILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTN 80
           K+L+ Y V + S+  QY   YDE   R +I  + A  N +  +  T+
Sbjct: 97  KVLSCYFVLSGSVEAQYSIDYDEEDIRGKIAGKDAQGNSLCEINYTH 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,451,061
Number of Sequences: 59808
Number of extensions: 400475
Number of successful extensions: 922
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)