Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e14
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...    34   0.10 
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    31   0.53 
At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-contain...    29   2.8  
At2g32910.1 68415.m04035 expressed protein                             29   2.8  
At2g36400.1 68415.m04467 expressed protein nearly identical to t...    29   3.8  
At3g47790.1 68416.m05206 ABC transporter family protein contains...    28   5.0  
At4g29180.1 68417.m04175 leucine-rich repeat protein kinase, put...    28   6.6  
At4g09450.1 68417.m01555 myb family transcription factor contain...    28   6.6  

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = -3

Query: 307 VAVINMDHGNFMIEKEISYSINFSQDLLYKILNSYI---VPNYSLAQQYFDLYDENGFRT 137
           + V+N    +F+ +  ++Y +N+    +Y  ++  I     ++SL Q Y D++D+   R 
Sbjct: 113 IEVVNRLRKDFVYDTLLNYGVNYDNTWIYDKIHHEINQFCSSHSLQQVYIDIFDQIDERM 172

Query: 136 RIPIQSACNNIISSVK 89
           +  +Q+ C      ++
Sbjct: 173 KDALQADCTRYAPGIE 188


>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 253 YSINFSQDLLYKILNSYIVPNYSLAQQ-YFDLYDENGFRTRIPIQSACNNIISSVKKTNS 77
           Y++   Q   Y I   ++  NY L Q+  FDLY    F T I +Q         +   + 
Sbjct: 97  YNLTVMQGTHYLIRAVFVYGNYDLKQRPKFDLYLGPNFWTTINLQDPSGGFYYRIWLQDG 156

Query: 76  KHKKFVYWPKDTNALVPLV 20
             ++ ++ PK  N  + LV
Sbjct: 157 TVEEVIHMPKSNNLDICLV 175


>At4g19040.1 68417.m02805 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           contains Pfam profiles PF01852: START domain, PF00169:
           PH domain
          Length = 718

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 241 FSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQ-SACNNIISSVKKTNSKHK 68
           F Q  L ++LNS      +  +++F   DE G  TRIP+  +  ++ +S  K   S HK
Sbjct: 371 FQQHCLLQMLNSV-----AGLREWFSQTDERGVHTRIPVMVNMASSSLSLTKSGKSLHK 424


>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 425 DAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDD 523
           D+Y  D ++IC  H ++R   + MV P   +DD
Sbjct: 610 DSYRRDPYYICERHALERPPRTYMVSPGRQDDD 642


>At2g36400.1 68415.m04467 expressed protein nearly identical to
           transcription activator GRL3 [Arabidopsis thaliana]
           GI:21539884 (unpublished); supporting cDNA
           gi|21539883|gb|AY102636.1|
          Length = 398

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +2

Query: 254 RDFFLNHKIAVVHIYNGNNMALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 433
           RD F  HK    H++ G N +  PV   P  +       AS V+  A  T  +  S  A+
Sbjct: 162 RDVFAGHKYCERHMHRGRNRSRKPV-ETPTTVNATATSMASSVAAAATTTTATTTSTFAF 220

Query: 434 HDDG 445
              G
Sbjct: 221 GGGG 224


>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = -3

Query: 295 NMDHGNFMIEKEISYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQSA 116
           N   GN ++    S S  F  DL Y +L S   P Y+    + D    + F + +PI + 
Sbjct: 123 NQSLGNILMGNMYSNSSGFDGDLAYYVLGSSSFPAYT---NHMD----SAFISDLPIYNI 175

Query: 115 CNNIISSVKKTNSKHKKFVYWPKDTNALVPL-VWR 14
            +    +   +   H+  + +PK+ N +  L +WR
Sbjct: 176 QHECSPNSSFSILIHQSPLAFPKEVNCVQGLNLWR 210


>At4g29180.1 68417.m04175 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 911

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 226 LYKILNSYIVPNYS--LAQQYFDLYDENGFRTRIPIQSACNNIISSV 92
           LY I  S++  NY    A   FDLY    F T + +++A  N+I  +
Sbjct: 106 LYLIRASFMYGNYDGKNALPEFDLYVNVNFWTSVKLRNASENVIKEI 152


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 464 HLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGN-KERGI 580
           H I+R +  K VLP + EDD   K+T A    GN K+ GI
Sbjct: 53  HDIERIESGKYVLPKYPEDD-YVKLTEAGESKGNGKKTGI 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,194,691
Number of Sequences: 28952
Number of extensions: 279459
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)