Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e13
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.84 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.84 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.5  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.5  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    22   4.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.9  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.8  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 238 DQEAAAQLNDPIKSYNFQHQAA 303
           D E++ Q NDP  ++N+Q+  A
Sbjct: 199 DTESSYQFNDPQFNFNYQYNQA 220


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 238 DQEAAAQLNDPIKSYNFQHQAA 303
           D E++ Q NDP  ++N+Q+  A
Sbjct: 219 DTESSYQFNDPQFNFNYQYNQA 240


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 103  NL*YSFFFYKNTTVSDGSWSSFVTTHEKKNITA 201
            NL Y F+    TT+ +G  S  VT     ++ A
Sbjct: 1275 NLKYEFWVTAATTIGEGQPSKKVTVSPSASVPA 1307


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 537 DTFNCTCVLPMT*IRLQSLTAQQTKILINLLFLIDRTIVITR*FYFT 677
           +T N  C L     +L  L  +   I++ L+F +   +++   F+FT
Sbjct: 500 NTLNKICALHHHLSKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFT 546


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 537 DTFNCTCVLPMT*IRLQSLTAQQTKILINLLFLIDRTIVITR*FYFT 677
           +T N  C L     +L  L  +   I++ L+F +   +++   F+FT
Sbjct: 225 NTLNKICALHHHLSKLVKLFNETFGIVLLLMFGVSFVVIVITIFFFT 271


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 531 YSDTFNCTCVLPMT*IRLQS 590
           Y D++ CTC L  + I  Q+
Sbjct: 3   YVDSYTCTCPLGFSGINCQT 22


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 189 LLFVRCDKRTPGSIRDSCI 133
           LLF+   KR P  ++D C+
Sbjct: 100 LLFLNLAKRWPKFVKDWCV 118


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 189 LLFVRCDKRTPGSIRDSCI 133
           LLF+   KR P  ++D C+
Sbjct: 100 LLFLNLAKRWPKFVKDWCV 118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,175
Number of Sequences: 336
Number of extensions: 3379
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)