Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e13
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0686 + 6049563-6050900                                           33   0.31 
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    29   5.1  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    28   6.7  
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458...    28   6.7  

>08_01_0686 + 6049563-6050900
          Length = 445

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 347 PSTRNESLIGGITTLSDVKDNVRRRITYLILPTRVPRCVRLPPK 478
           P TR  SL+G       ++ N RR++T L  PTR P  V  P +
Sbjct: 59  PGTRVPSLLGFFAQRHQIQANARRKLTKL-FPTRAPPLVAAPSR 101


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 324 RIDKNREHHQREMNLSSEESRPS 392
           RIDK ++HH R++    EES+ S
Sbjct: 733 RIDKAQQHHHRQVEEEEEESKSS 755


>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
            21260180-21260461,21261084-21261587,21261973-21261981,
            21262122-21262196,21262375-21262449,21262557-21263494,
            21263577-21263607,21263694-21263979,21264691-21264905,
            21265329-21265437,21265556-21265611,21265730-21265822,
            21266348-21266393,21266496-21267221,21267489-21267550,
            21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 113  ILFSFIKIQLSLMDPGVLLSQRTKRRTLQRTADGYWEDQRRKTKRPQPN 259
            ++ SF+++ L L    V+   + KR   QR  D   ED++   KRP+ N
Sbjct: 1059 VILSFLEVSLKLYKRYVIKRNQRKR---QREEDLKKEDKKTSEKRPKTN 1104


>05_07_0152 +
           28044733-28045032,28045131-28045220,28045770-28045829,
           28045912-28045977,28046161-28046226,28046330-28046405,
           28046721-28046785,28046879-28046971,28047302-28047322,
           28047600-28047692,28047939-28047998,28048157-28048222,
           28048314-28048373,28048498-28048612,28048738-28048850
          Length = 447

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = -3

Query: 444 VGKIKYVILLLTLSFTSLRVVIPPMRDSFLVDGALYFCLSLVSWRALCSLVL 289
           +G I+     +TLS  ++ VV   ++DS   D  +Y+ LS++S  AL + V+
Sbjct: 306 LGAIQISSAGMTLSLLAVAVVFF-LKDSISQDSHMYYTLSMISLVALVAFVI 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,071
Number of Sequences: 37544
Number of extensions: 321064
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)