Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e13
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29823| Best HMM Match : Metallothio (HMM E-Value=2.6)               29   3.0  
SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  

>SB_29823| Best HMM Match : Metallothio (HMM E-Value=2.6)
          Length = 812

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 296 KLHSARHDTKDRQK*RAPSTRNESLIGGITTLSDVKDNVRRRITYLILPTRVPRCVRLPP 475
           +L   RH+ +DR++   P + +    G      D  D++ +R+  L L      CV L  
Sbjct: 291 RLAERRHNGRDRRRYGQPDSGD----GKAVLFEDGFDSLSQRLLVLELSLLDSFCVLLDD 346

Query: 476 KQILCHAP 499
           +  LCH P
Sbjct: 347 RVYLCHGP 354


>SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 491 HAPSS*HPHSLTTLFRHV*LHLCS 562
           H P++ H H+LTT++ H+   +C+
Sbjct: 44  HKPTTIHSHTLTTMYNHILTTMCN 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,235,225
Number of Sequences: 59808
Number of extensions: 383212
Number of successful extensions: 790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)