Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e13
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81037-2|CAB02746.1|  125|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U00064-3|AAB52706.2|  375|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81037-2|CAB02746.1|  125|Caenorhabditis elegans Hypothetical
           protein C17E4.4 protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 185 RRTLQRTADGYWEDQRRKTKRPQPN*MIRSNPIIF 289
           +RT+Q     YWED+     +  P  M+   P++F
Sbjct: 54  KRTIQEKKSDYWEDKLDSFNKKHPFLMLHFAPVVF 88


>U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical
           protein F25B4.5 protein.
          Length = 710

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 389 LSDVKDNVRRRITYLILPTRVPRCVRLPPKQILCHAPS 502
           L  + DNV  R  ++  P+RV     +PP+Q + +AP+
Sbjct: 637 LGQLPDNVTIRTRFVNDPSRVALAPAMPPQQQMVYAPA 674


>U00064-3|AAB52706.2|  375|Caenorhabditis elegans Hypothetical
           protein ZC155.4 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 453 GTLVGKIKYVILLLTLSFTSLRVVI 379
           G +VG I Y++ LL L FT++RV+I
Sbjct: 60  GIIVGII-YILSLLALKFTTIRVII 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,379,236
Number of Sequences: 27780
Number of extensions: 301782
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)