Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e13
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18200.1 68417.m02705 purine permease family protein similar ...    28   5.6  
At5g62580.1 68418.m07855 expressed protein                             27   9.8  
At4g32570.1 68417.m04636 expressed protein                             27   9.8  
At3g13960.1 68416.m01762 expressed protein identical to transcri...    27   9.8  

>At4g18200.1 68417.m02705 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 1128

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -3

Query: 474 GGKRTHLGTLVGKIKYVILLLTLSFTSLRVVIPPMRD-----SFLVDGALYFCLSLV 319
           GGK T +GTLV  I + +L L   F+  +   P   D     SF + G++Y    L+
Sbjct: 82  GGKSTWMGTLVQLIGFPVLFLFRFFSQTKNPKPTEADFRKFSSFTILGSVYIVTGLL 138


>At5g62580.1 68418.m07855 expressed protein
          Length = 615

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 246 GRSPIK*SDQIL*FSTPSCIVLATTPRIDKNREH-HQREMNLSSEESRPSV 395
           G +P K    ++  STP    LATT R   NR+   Q++ +L++  ++P+V
Sbjct: 320 GSTPAKSRTHLVNRSTPPGSSLATTARKQANRKSIDQKKTSLTASLTKPNV 370


>At4g32570.1 68417.m04636 expressed protein
          Length = 361

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 275 NPIIFNTKL--HSARHDTKDRQK*RAPSTRNESLIGGITTLSDVKDNVRR 418
           NP + +T +  H    D K  +    PST + S  GG+  LS   D V R
Sbjct: 36  NPTLASTSMADHRLPPDNKAAKAAMTPSTASASSAGGLGGLSSTSDLVER 85


>At3g13960.1 68416.m01762 expressed protein identical to
           transcription activator GRL5 [Arabidopsis thaliana]
           GI:21539888 (unpublished); supporting cDNA
           gi|21539887|gb|AY102638.1|
          Length = 397

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +3

Query: 285 FSTPSCIVLATTPRIDKNREHHQREMNLSSEES 383
           F+ P+  VLA + R D+N+E  +++ + SS++S
Sbjct: 333 FNKPTRSVLANSSRQDQNQEEDEKDSSESSKKS 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,762
Number of Sequences: 28952
Number of extensions: 267790
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)