Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e12
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)              28   9.0  

>SB_8649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 FSKALVALQKPSWQVNSLAALEIT-QLSLHC*SVTHGNRFNEQSTPRLC*NVKFNGGA 315
           F+K    ++     +N L AL I    S    S   G R N QSTP++    K +GG+
Sbjct: 6   FTKPTTKVEPKHLYMNKLIALTIILSTSFFTFSQVLGGRENSQSTPKVAEATKLSGGS 63


>SB_4593| Best HMM Match : Ion_trans (HMM E-Value=2.9e-40)
          Length = 1120

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 715 LQLISVQHHNGQTIAIATHRTFNYTVIFQICIINVFHVPLFERVRNKQYIS 563
           L +ISV+H      A+  HR  N   +  I + +V       R+RNK+Y+S
Sbjct: 834 LSVISVRH---VCTAVCLHRIRNKRRLSVISVRHVCTAVCLHRIRNKRYLS 881


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,607,406
Number of Sequences: 59808
Number of extensions: 519918
Number of successful extensions: 1391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)