Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e12
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55010.1 68414.m06283 plant defensin-fusion protein, putative...    31   1.0  
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    29   4.2  
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    28   5.6  

>At1g55010.1 68414.m06283 plant defensin-fusion protein, putative
           (PDF1.5) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); similar to antifungal
           protein 4 [Raphanus sativus] gi|1655683|emb|CAA65983
          Length = 80

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 248 CVTDQQCRDNCVISSAASELTCQDGF 171
           CV D QCRD+C+ +   ++  C  G+
Sbjct: 43  CVNDYQCRDHCINNDRGNDGYCAGGY 68


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 46  LTHA*DTTKSPPAEKM*SKPSAGSHSIKSGACAFSKALVALQKPSWQVNSLAALEITQLS 225
           L H  DT    P E + SK      +++S   +F     ++QK  W V S A  ++T   
Sbjct: 729 LLHNLDTVYCKPPETITSKDDGLVPTLESRQLSFHVEEPSVQKDQWSVLSGATEQVTDGG 788

Query: 226 LHC*SVTHGNR-FNEQ 270
               S   GN+ FN Q
Sbjct: 789 YTNDSAVIGNQNFNRQ 804


>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
           identical to chromatin remodeling factor CHD3
           [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/47 (23%), Positives = 18/47 (38%)
 Frame = +3

Query: 6   PRRSRIVHQVSVRAHACLRHDKISACGENVKQAQCGIAFYQVRSLCV 146
           P++ R   QV        + +   ACGE+     C    Y   + C+
Sbjct: 30  PKKDRTFEQVEAIVRTDAKENACQACGESTNLVSCNTCTYAFHAKCL 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,470,195
Number of Sequences: 28952
Number of extensions: 339665
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)