Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc4e07
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-2|CAB01424.1| 453|Caenorhabditis elegans Hypothetical pr... 36 0.038
AC084159-7|AAK39370.2| 277|Caenorhabditis elegans Hypothetical ... 30 1.4
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 30 1.9
AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine re... 30 1.9
U21309-3|AAN73880.2| 143|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 29 4.4
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 5.8
AF077536-4|AAK31409.1| 726|Caenorhabditis elegans Hypothetical ... 28 5.8
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical pr... 28 7.7
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z78013-2|CAB01424.1| 453|Caenorhabditis elegans Hypothetical
protein F15B9.6 protein.
Length = 453
Score = 35.5 bits (78), Expect = 0.038
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 474 LLYNTVLTAILKQNNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNY 325
LLY V+ I++ N P +V + +I+ NLG CP DR+K C +
Sbjct: 4 LLYFIVIL-IIQANVPGSVQDSPEAYNILEPNLGGCPRTSDRIKFCSAKF 52
>AC084159-7|AAK39370.2| 277|Caenorhabditis elegans Hypothetical
protein Y73B3A.16 protein.
Length = 277
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 574 NVDTLPAFTIAFCVISFDNVRALRQNNGPKFGI 672
NV + T CV+ F N R +RQ+ PK+ +
Sbjct: 111 NVCFIQPSTFHVCVVDFGNARTIRQDKPPKYAL 143
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Frame = -2
Query: 570 NELKYPWNLI--TANSFIVSTDESRQSQYIYRTF------LLYNTVLTAILKQNNPFNVI 415
N +K P N I AN FIV T + YIYR + +N ++T++ K F I
Sbjct: 872 NYIKLPKNTIRENANFFIVFTQDKLNLDYIYRDHCGEIDKIKFNEMITSVWKDKYSFLTI 931
Query: 414 AENTSI 397
+ + I
Sbjct: 932 DKTSDI 937
>AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine
receptor, class w protein142 protein.
Length = 361
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = -2
Query: 579 DVCNELKYPWNLITANSFIVSTDESRQSQYIYRTFLLYNTVLTAILKQNNPFNVIAENTS 400
D C + K+ WN+ I+ D S++S T+LL++ L L NP E +
Sbjct: 100 DPCFQSKWYWNVFLDRILIMLKDHSQRSS----TWLLFSIALIRTLVIRNPMKTEYEKLT 155
Query: 399 ------ISIIVRNLGNCP 364
++IIV +L CP
Sbjct: 156 KPPTSFLAIIVVSLVFCP 173
>U21309-3|AAN73880.2| 143|Caenorhabditis elegans Hypothetical
protein C13B9.1 protein.
Length = 143
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 406 IFSNYIKWIVLFENCGQNCIVQKKSAI 486
I+ N KW+ L NC +N I+Q K ++
Sbjct: 79 IYGNLKKWLELILNCYRNIIIQTKKSM 105
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 612 AESDSESGQSVDVCNELKYPWNLITANSFIVSTDES 505
AESDSE Q +D + +K W A+S V D++
Sbjct: 617 AESDSEDSQMIDTTDLVKKSWFGSLASSMSVERDDT 652
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 612 AESDSESGQSVDVCNELKYPWNLITANSFIVSTDES 505
AESDSE Q +D + +K W A+S V D++
Sbjct: 617 AESDSEDSQMIDTTDLVKKSWFGSLASSMSVERDDT 652
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 612 AESDSESGQSVDVCNELKYPWNLITANSFIVSTDES 505
AESDSE Q +D + +K W A+S V D++
Sbjct: 617 AESDSEDSQMIDTTDLVKKSWFGSLASSMSVERDDT 652
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 477 FLLYNT-VLTAILKQ---NNPFNVIAENTSISIIVRNLGNCPNNKDRVKCCDLNYGGIPP 310
F YNT VL +ILK+ + P ++ + + +R + + PN + +V CC +P
Sbjct: 309 FHKYNTHVLASILKEYLRSIPGKILLSG-NYELWMREIADEPNTEKKVSCCRALLSHLPT 367
Query: 309 GH 304
H
Sbjct: 368 SH 369
>AF077536-4|AAK31409.1| 726|Caenorhabditis elegans Hypothetical
protein C16A11.3 protein.
Length = 726
Score = 28.3 bits (60), Expect = 5.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 610 CVISFDNVRALRQNNGPKFGI 672
CV+ F N R +RQ+ PK+ +
Sbjct: 561 CVVDFGNARTIRQDKPPKYAL 581
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 406 IFSNYIKWIVLFENCGQNCIVQKKSAI 486
I+ N KW+ L NC N I+Q K ++
Sbjct: 203 IYGNLKKWLELILNCYGNIIIQTKKSM 229
>Z73977-2|CAA98291.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 645 PQSAYIIKGDYAESDSESGQSVD--VCNELKYPWN 547
P+S Y+ GDY + +S +++ +C ++KYP N
Sbjct: 88 PESNYLFLGDYVDRGPKSIETIVLLLCYKIKYPNN 122
>Z73968-1|CAA98230.2| 349|Caenorhabditis elegans Hypothetical
protein C05A2.1 protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 645 PQSAYIIKGDYAESDSESGQSVD--VCNELKYPWN 547
P+S Y+ GDY + +S +++ +C ++KYP N
Sbjct: 88 PESNYLFLGDYVDRGPKSIETIVLLLCYKIKYPNN 122
>Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical
protein M03C11.2 protein.
Length = 848
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -1
Query: 238 QQVQTIQRINCAPIRSRRRICEFTRKRKQPA 146
+Q+Q+ +R+ ++RR + E +RKRK PA
Sbjct: 106 EQIQSRERLQSRIDQARRGMVEVSRKRKAPA 136
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = -2
Query: 570 NELKYPWNLI--TANSFIVSTDESRQSQYIYRTFL------LYNTVLTAILKQNNPFNVI 415
N +K P N I AN FIV T + YIYR +N ++T+I K F I
Sbjct: 836 NYIKLPKNTIRENANFFIVFTQDKLNLDYIYRDHCGEIDKSKFNEMVTSIWKVKYSFLTI 895
Query: 414 AENTSI 397
+ + I
Sbjct: 896 DKTSDI 901
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,152
Number of Sequences: 27780
Number of extensions: 313545
Number of successful extensions: 928
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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