Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e06
         (247 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle...    63   1e-09
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...    54   8e-07
UniRef50_Q6MCD6 Cluster: Putative uncharacterized protein; n=1; ...    30   8.6  

>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 252

 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +2

Query: 161 MKPTNNVMFDDASVLWIDTDYIYQNLK 241
           MKPTNNVMFDDASVLWIDTDYIYQNLK
Sbjct: 1   MKPTNNVMFDDASVLWIDTDYIYQNLK 27


>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score = 53.6 bits (123), Expect = 8e-07
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +2

Query: 161 MKPTNNVMFDDASVLWIDTDYIYQNLK 241
           M P NNVMFDDASV+WID DYIYQN K
Sbjct: 1   MTPNNNVMFDDASVMWIDADYIYQNSK 27


>UniRef50_Q6MCD6 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Protochlamydia amoebophila UWE25|Rep:
           Putative uncharacterized protein - Protochlamydia
           amoebophila (strain UWE25)
          Length = 868

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 170 TNNVMFDDASVLWIDTDYIYQNL 238
           T+NV F+D+ ++++D DY+Y  +
Sbjct: 392 TSNVKFNDSEMIYLDPDYLYSKM 414


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,546,431
Number of Sequences: 1657284
Number of extensions: 2226992
Number of successful extensions: 3766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3766
length of database: 575,637,011
effective HSP length: 60
effective length of database: 476,199,971
effective search space used: 10000199391
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)