Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e06
         (247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    28   0.20 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   1.8  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       23   4.3  
SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr...    23   4.3  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    23   4.3  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    23   7.4  

>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 125 YINLVISSVY*TLSRLLTTPFXVNST 48
           YIN V   +  TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 213  SIQRTDASSNITLFVGFIFQNIVATI 136
            S++ T    N+ +FVG++F NI A +
Sbjct: 1481 SMRYTHRWRNLGIFVGYVFFNIFAVL 1506


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 182 MFDDASVLWID 214
           ++DDA VLWID
Sbjct: 132 VYDDACVLWID 142


>SPBP26C9.02c |car1||arginase Car1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 323

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 182 MFDDASVLWID 214
           ++DDA VLWID
Sbjct: 132 VYDDACVLWID 142


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -1

Query: 187 EHNVIRRLHIS 155
           EHNV RRLH+S
Sbjct: 101 EHNVPRRLHLS 111


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 205 KNRRVVEHNVIRRLHISKYCS 143
           KN++++E N I +  +S+Y S
Sbjct: 498 KNKKLIEENKILQKRLSEYTS 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,573
Number of Sequences: 5004
Number of extensions: 10806
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)