Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e06
         (247 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    25   6.4  

>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 165 SRRITLCSTTRRFFGSTRITFIKI*KK 245
           ++ I LCS++  FF S+R+  I+I K+
Sbjct: 97  AKEILLCSSSPCFFNSSRLQRIRIIKR 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,357,549
Number of Sequences: 37544
Number of extensions: 52282
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 14,793,348
effective HSP length: 60
effective length of database: 12,540,708
effective search space used: 263354868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)