Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e06
         (247 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)                     26   5.4  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)           25   7.1  
SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)        25   7.1  

>SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)
          Length = 289

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 167 PTNNVMFDDASVLWIDTDY--IYQNLK 241
           P  N  +D  S +W D DY   Y+NLK
Sbjct: 61  PFKNQEYDGESGIWEDEDYRVFYENLK 87


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 167 PTNNVMFDDASVLWIDTDY--IYQNLK 241
           P  N  +D  S +W D DY   Y+NLK
Sbjct: 344 PFKNQEYDGESGIWEDEDYRVFYENLK 370


>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
          Length = 1879

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 211  DPKNRRVVEHNVIRRLHISKYCSDYMIFSI 122
            D  + R++ +N++R LH +     Y+I SI
Sbjct: 1230 DMSHVRILVYNILRSLHFTSGSKVYLIISI 1259


>SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)
          Length = 573

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 86  LTFNKRYLSLS*YTKNHIVATIF*NMKPTNNVMFDDASVLWIDTDYIYQ 232
           +T N R+ SL+      I+  +   +KP  N   +DA +L    D  +Q
Sbjct: 282 ITSNPRFFSLAATYCKSIIGLVVAEVKPRGNCNREDAGILGCSYDDDFQ 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,360,825
Number of Sequences: 59808
Number of extensions: 69260
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 16,821,457
effective HSP length: 59
effective length of database: 13,292,785
effective search space used: 292441270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)