Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e06
         (247 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014135-199|AAN06582.2|  523|Drosophila melanogaster CG11155-PC...    27   2.6  
AE014135-198|AAN06581.2|  855|Drosophila melanogaster CG11155-PB...    27   2.6  
AE014135-197|AAF59382.3|  910|Drosophila melanogaster CG11155-PA...    27   2.6  

>AE014135-199|AAN06582.2|  523|Drosophila melanogaster CG11155-PC,
           isoform C protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 214 VDPKNRRVVEHNVIRRLHISKYCSDYMIFSIL 119
           V  K   V++ N+  R ++ K C  Y+I SIL
Sbjct: 2   VRKKREIVIKENIQGRSYLKKICCSYIILSIL 33


>AE014135-198|AAN06581.2|  855|Drosophila melanogaster CG11155-PB,
           isoform B protein.
          Length = 855

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 214 VDPKNRRVVEHNVIRRLHISKYCSDYMIFSIL 119
           V  K   V++ N+  R ++ K C  Y+I SIL
Sbjct: 2   VRKKREIVIKENIQGRSYLKKICCSYIILSIL 33


>AE014135-197|AAF59382.3|  910|Drosophila melanogaster CG11155-PA,
           isoform A protein.
          Length = 910

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 214 VDPKNRRVVEHNVIRRLHISKYCSDYMIFSIL 119
           V  K   V++ N+  R ++ K C  Y+I SIL
Sbjct: 2   VRKKREIVIKENIQGRSYLKKICCSYIILSIL 33


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,556,186
Number of Sequences: 53049
Number of extensions: 96624
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 24,988,368
effective HSP length: 61
effective length of database: 21,752,379
effective search space used: 435047580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)