Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e06
         (247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82286-6|CAB05304.1|  376|Caenorhabditis elegans Hypothetical pr...    25   7.1  
AF240777-1|AAF63745.1|  376|Caenorhabditis elegans delta 12 fatt...    25   7.1  
L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome regu...    25   9.4  

>Z82286-6|CAB05304.1|  376|Caenorhabditis elegans Hypothetical
           protein W02A2.1 protein.
          Length = 376

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 160 YEADE*RYVRRRVGSLDRH 216
           YEADE  +VR +  ++DRH
Sbjct: 261 YEADEWGFVRGQTQTIDRH 279


>AF240777-1|AAF63745.1|  376|Caenorhabditis elegans delta 12 fatty
           acid desaturaseFAT-2 protein.
          Length = 376

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 160 YEADE*RYVRRRVGSLDRH 216
           YEADE  +VR +  ++DRH
Sbjct: 261 YEADEWGFVRGQTQTIDRH 279


>L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 3 protein.
          Length = 504

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 235 ILINVIRVDPKNRRVVEHNVIRRLHISKYCSD 140
           ++  V++V PK R+ +  NV+ +L  S   SD
Sbjct: 53  LITRVLQVLPKTRKQINDNVLYKLVSSHLSSD 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,178,449
Number of Sequences: 27780
Number of extensions: 56535
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 12,740,198
effective HSP length: 61
effective length of database: 11,045,618
effective search space used: 220912360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)