Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc4e06
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          19   6.9  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    19   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 161 MKPTNNVMFDDASVLWID 214
           M+P + V F ++S  W+D
Sbjct: 34  MEPPSRVEFSNSSGAWLD 51


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 161 MKPTNNVMFDDASVLWID 214
           M+P + V F ++S  W+D
Sbjct: 34  MEPPSRVEFSNSSGAWLD 51


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 219 SVSIQRTDASSNITLFVGFIF 157
           SVS +  D  +N   ++GF+F
Sbjct: 50  SVSWEVHDPVTNSDTYIGFLF 70


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 125 TKNHIVATIF*NMKPTNNVMFDDASVLW 208
           T  + + TIF N   TN     D  + W
Sbjct: 77  TNPNAMKTIFKNTIFTNVASTSDGGIFW 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,776
Number of Sequences: 438
Number of extensions: 685
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)